MidgeBase gene description page [Pn.15916]
Outline
| Gene ID | Pn.15916 |
| Type | Protein coding gene |
| Scaffold | PnScaf34109 |
| Start | 10434 |
| End | 13215 |
| Direction | - |
Sequence
Transcript: 1824 (bp)
ATGTCGACATCGGAGGATGCTGGCAGGGACGAAAAGAAGAAGGAGGAGGAAGTTTTTCCGATGGAAATCAAGGGCACATTTCCAAAGCGCCGGCAGGAAGTGCTGAATCTGAATGGCTGGGGATACTCGGACAGCTACTTTGCGTTTCAGAACGGCTATCTCACATTTAAAGGGAGCAGATACTCGATGTGCAACATTCCGTTCAAGAACGCCCGCGACCTCCTCATGCAGCTCCTCAAATACGACATTCGCAACTTCAAGCCTTATGTCAATCCAACGCACACCGAAAGTGACTACCCGCCACCCGTGGAGAACGCGCTGCTCACAAAGGAGCTGCAAGAAGCCAGCATCGAGTTTTCTCGCGACTTTTCCGACCGCTTTCTCAGATGTCGCGGACAAGCGACAAGGGATTTCTACGTCTTGCGCTACGGAAAGTTCCAGCGCATTCCGGACTTGGTCGTGTGGCCGAAAAGCCACGAAGAAGTCGTGAAACTTGTCGAGCTCGCGAATAAGCACTGCAGCGTCATCATTCCTTACGGCGGCGGCACAAACATCACCATGTCGCTCAACTACAGCAAGCGCGAAAACCAGCGGCTGTTCATCTCGCTCGACACCTCACTCATGAACCGAATTTTGTGGATCGACCGCGTCAGCATGACGGCGTGCATCGAGGCGGGAATTGCCGGCGGCGACCTCACCAGAGTCCTCGACGGCCTCGGCTACACGATCGGCCACGAGCCGGACTCGCTGGAGTTCTCGACGCTCGGCGGCTGGATCGCGACTCGCAGCAGCGGAATGAAGCAGCAAACTTATGGCAACATCGAGGACATCGTGCGGAAAGTGACGCTCGTCACGAGCGTTGGCGTGATGGAGAAGAATTATGTGGTGCCGCGTAGTTCCGTTGGACCCGACTACGATCAGATGGTCATGGGGTCGGAGGGAACACTCGGCGTAATCACAAGAGCAGTGGTGAGACTTCATAAAAAGCCGCCGGTTCGTCGCTGCGGCAGCATATTGTTTCCCGATTTCGAGTCGGGCGCCAAGTTCATGTACGACGTGAGCAAGTTTCGCTCGAAGCCGTCGAACATCAGGCTCGTCGACAACATTCACTTTCAATTGGGTCAAGTGCTGCGCCACAACACCAATTTCATGGGTGACTTTATTGATCAATTTAAGAAACATGGCGCGGCAATATTTCTTCGCTACGACATGAGCCGAGTCGCTCTCGCCACCTATTTGATTGAGGGCGAGGGCGACGAAGTCGAGAGCATCGAGGCGAGATTGAGGGAAGCATCTTGGCGGTATTGGGGCATTTCCGCCGGCAAAAAGTACGGCGAACGGGCTTATCTCATGACATTCACCGTGTGTTACATTCGGGATTTGTTCTTCGACATGGGATTCCTGTTTGACTCGATTGAGCCGAGCGTTTCGTGGAGCAAGTGCTGGTCATTGATCAATGCCATCCGGGGTGTGTGGGGCGAGGAGCTCGGGCGGAGGAAAATTTTCAACATTCTCGCTCTTCGAATTTCGCAAATCTACAATGACGGTGTCTGCGTGTATTTCTACTACGGAATCGGACCGACAACCGAGCGAGATCAGTTGGAGACATTCGAGGAGTTGACAGACATTTTGCGTCGAGTTATTTTGGCATCGGGCGGGAATTTGTCGCATCACCACGGCGTGGGAAAGAAGAGCTCAAAGTTCTACGCAACATCTGTGTCGCGTGTCGGCGTCGACATGTTCAATGCAATCAAAAGCCGACTCGATCCGAGCAACGTGTTCGATGCAGGAAATCTCGTCGAGGACAAGAACGGCGCTAAATTG
Protein: 608 (aa)
MSTSEDAGRDEKKKEEEVFPMEIKGTFPKRRQEVLNLNGWGYSDSYFAFQNGYLTFKGSRYSMCNIPFKNARDLLMQLLKYDIRNFKPYVNPTHTESDYPPPVENALLTKELQEASIEFSRDFSDRFLRCRGQATRDFYVLRYGKFQRIPDLVVWPKSHEEVVKLVELANKHCSVIIPYGGGTNITMSLNYSKRENQRLFISLDTSLMNRILWIDRVSMTACIEAGIAGGDLTRVLDGLGYTIGHEPDSLEFSTLGGWIATRSSGMKQQTYGNIEDIVRKVTLVTSVGVMEKNYVVPRSSVGPDYDQMVMGSEGTLGVITRAVVRLHKKPPVRRCGSILFPDFESGAKFMYDVSKFRSKPSNIRLVDNIHFQLGQVLRHNTNFMGDFIDQFKKHGAAIFLRYDMSRVALATYLIEGEGDEVESIEARLREASWRYWGISAGKKYGERAYLMTFTVCYIRDLFFDMGFLFDSIEPSVSWSKCWSLINAIRGVWGEELGRRKIFNILALRISQIYNDGVCVYFYYGIGPTTERDQLETFEELTDILRRVILASGGNLSHHHGVGKKSSKFYATSVSRVGVDMFNAIKSRLDPSNVFDAGNLVEDKNGAKL
| Type | Start | End | Length |
| CDS |
10437 |
10595 |
159 |
| CDS |
10680 |
10967 |
288 |
| CDS |
11071 |
11507 |
437 |
| CDS |
11908 |
12668 |
761 |
| CDS |
13037 |
13215 |
179 |
| intron |
10596 |
10679 |
84 |
| intron |
10968 |
11070 |
103 |
| intron |
11508 |
11907 |
400 |
| intron |
12669 |
13036 |
368 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002049676 |
GJ20622 [Drosophila virilis] gb|EDW60869.1| GJ20622 [Drosophila virilis] |
1e-144 |
| InterPro |
IPR016168 |
FAD-linked oxidase, FAD-binding, subdomain 2 |
|
| InterPro |
IPR025650 |
Alkyldihydroxyacetonephosphate synthase |
|
| InterPro |
IPR016166 |
FAD-binding, type 2 |
|
| InterPro |
IPR004113 |
FAD-linked oxidase, C-terminal |
|
| InterPro |
IPR016164 |
FAD-linked oxidase-like, C-terminal |
|
| InterPro |
IPR006094 |
FAD linked oxidase, N-terminal |
|
| InterPro |
IPR016167 |
FAD-binding, type 2, subdomain 1 |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(BP) |
GO:0008610 |
lipid biosynthetic process |
|
| Gene Ontology(MF) |
GO:0016614 |
oxidoreductase activity, acting on CH-OH group of donors |
|
| Gene Ontology(MF) |
GO:0008762 |
UDP-N-acetylmuramate dehydrogenase activity |
|
| Gene Ontology(MF) |
GO:0008609 |
alkylglycerone-phosphate synthase activity |
|
| Gene Ontology(MF) |
GO:0050660 |
flavin adenine dinucleotide binding |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Gene Ontology(MF) |
GO:0016491 |
oxidoreductase activity |
|
| Pfam |
PF03467.10 |
Smg-4/UPF3 family |
0.027 |
| Pfam |
PF01565.18 |
FAD binding domain |
8.2e-34 |
| Pfam |
PF02913.14 |
FAD linked oxidases, C-terminal domain |
3.8e-29 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.08688 |
| Pn.05945 |
Orthologous genes
| Species |
Gene ID |
| P. humanus |
PHUM234530-PA |
| P. vanderplanki |
Pv.01891 |
| C. quinquefasciatus |
CPIJ008027 |
| C. quinquefasciatus |
CPIJ016322 |
| T. castaneum |
TC006332 |
| D. melanogaster |
FBgn0033983 |
| D. plexippus |
DPOGS210809PA |
| C. quinquefasciatus |
CPIJ008026 |
| H. melpomene |
HMEL009117-PA |
| H. sapiens |
ENSP00000264167 |
| P. vanderplanki |
Pv.04168 |
| C. quinquefasciatus |
CPIJ016321 |
| H. melpomene |
HMEL008749-PA |
| A. gambiae |
AGAP004358 |
| A. aegypti |
AAEL007789 |
| A. aegypti |
AAEL010405 |
| N. vitripennis |
NV18311-PA |
| S. invicta |
SI2.2.0_08811 |
| A. mellifera |
GB16460-PA |
| H. melpomene |
HMEL016064-PA |
| P. vanderplanki |
Pv.13154 |
| C. quinquefasciatus |
CPIJ013647 |
| C. quinquefasciatus |
CPIJ016320 |
| A. aegypti |
AAEL007793 |
| B. mori |
BGIBMGA007125-TA |