MidgeBase gene description page [Pn.15908]
Outline
| Gene ID | Pn.15908 |
| Type | Protein coding gene |
| Scaffold | PnScaf34047 |
| Start | 260 |
| End | 4312 |
| Direction | + |
Sequence
Transcript: 3000 (bp)
ATGCCACGAGCGCGCCTCCAGTGCTTCAGCTTCAGCATCTACACCAGCGAGTACCAGTTCGGGCTGTGCCGCGAGTGGATCGACCAGCTCATCGTGGGCGGCGGCGGCGGCGACACGCACGGCCACCATCAGTGCAAGTCGTGCGGCATGTTCAGGAACTGCTCCACCTGCCTGCGCAGCCTCAACTGCGGCTGGTGCTTCGTCGAGGAGAACCCGATAGAGGGCGCGTGCGTCGACGGCGACTTTAGCGGCGCCGCCGTCGAGTGCTCGAGCGCCCTCAACACCAGTGAGCCGGTGCAGTACAGCTACGCCGAGTGCCCCGACCTGGACGAGTGCAGCCTCGACATCCACGACTGCCATCCCAACGCCGACTGCCACAACACGCGCGGCTCCTACGTCTGCCAGTGCCGGAAGGGCTTCTTGGGCGATGGAAAGCGAAAGTGCGACAAAACTTGCGACGACGTCTGCATGCACGGTCACTGCTCGAACTTTCCCGACTACAAGTGCATCTGCGACCTCGGCTGGACGGGCGCTGATTGCTCGATCAACTGCCAGTGCAACAACCATTCAACATGCGTCAAAGGTGTCGGCATCTGTGACGAGTGTCAAGACCACACGGAGGGCGTGCACTGCGAGAAGTGCGTGGTCGGCAGTTTCGGCAACGCCACAGCAGGCGGCTGTCAGCCCTGCTCGTGCAACGGACACGCAGACAAGTCCGCGGGCCTGTGCGACCCGAAGACGGGCAAGTGCTTTTGCGTGGACAACACCGAGGGCGAGAACTGCGAGCTGTGCGCGCGCAACTTCTACGGCGACCCAAAGGACAGCGGCCGCTGCTACCTGCAGTGCCAGTCGCGCGCGCTCCTCCAGGAGACGGCAGTGCAGGGCATCGGCTCGTTCGGCGTGCGCACGTCGCCCGGCGAGTGCCTCTGGCTGCTGAAGCTCGACGCCTCCGTCGCCAACGGCAGCCTCATCCAGTTCGAGGTGGACGACACGATGAACGTCAGCTGCCACAGCAACGCCATCTACACGTTCGCGAGCGTCGCCGAGTTCAGCGACAAGTTCGGCCACAAGAAGCTGCTGAATGCGGTGTGCGACTCCGCGAGCGTCGTCAGCGAGTCGCGCACCGGCGAGATGGCCGTCTACTTCCGGCGCACGGCGCGCTGCGACGGCTTCAACGCGGTCGTACGCATACTCAGCTGCGGCCTCGGCACGTGCACGCCGCCCTTCGTGTGTAACGGTACGCGGTGTGCGTGCCCGCCCGAGCGGCACGGGCCGCGGTGCGAGCACGCCGGCAGCGCCGTGTGCGCGCAAAACTGCGACGCCGGCACGTCCGTGCGCGTGCGCGAGCTGTTCAGCACGCAAAGCGTCGACAAGAGCCTGCGGCACCTGCGCAAGACGCTGCCGCGCTTCGGCAACTCCGTCAGCGCCGACCGGCGCGGCTTCCTCTGGATCTTCGGCGGCTTCTCGCTCACCAACGGCGCCCTCAACGACATCCGCCAGTTCGACACCAAGAACCGCACGTGGGTGCAGGTGACGGTGGACGGCACCGCGTCCAAGATGCCGCTCGGGCGCTTCTTCCACGCCGCCGAGATCAAGGCGCAGTCGGTGTTCGTGCACGGCGGCCTCGGCAACGACTTCGAGGTGTTCGCCGACCTCTGGGAGTTCAACATCCACGAGCAGCGCTGGAGCGAGCTGGAGGGCGGCCGCGAGGACGCGCCTGGCCCGCTTGCCGGCCACACGATGAACGTCATCAAGGAGGGCGAGGGCGAGGCGCTGGTGGTCGTCGGCGGGTACAGGGGCGAGCGTCGGAGGCAGCGGGAGGCAGCGAGCACCGAGCAGAACGAGGCGAGTGCGAGCGAGTCGACCGAAAGTGAGCAACAGGCGGTGAGGAGGACGACGGAGAGCGACGGGGATTTGCCGAAGGCGAGAAGGAGGAGAAGCGGCAGCGCGGAGCCGGAGAAGCGCGGGATCGTTTTTCAGTACGACTTCGAGAGGAAGGCGTGGAGCGGCTTGAAGGTCGTCGGAAACCCTCCGGAGCTGATTTTCGGGCACACAACCTCCTATCACGTGCAGGCGCAAGTTCTCTACATCTTCGGCGGTTATCAGGCAGTCGGTGGACGCATTCAGATGGCCAATCGGCTCTACACCCTCCGCAAGGTGAAGAACGTCTGGACGTGGAATCTGCTTCCGACCTTCGACGAGCTCAACCGTCCGGAGGAGAATCTGCCGCGTGCACGCTTCCTCCACTCGGCCATTCCCTTCGCCAACTTCCTCGCAATCCACGGCGGCGCCACGCAGCCGGCCAACGCCAGCGACACGCTCAACGCCTACGTCTACAAGTGCAACTCCTACATCCGCCTAAGCGAGGGCGTCGAGATGTCGGCCGCCGCAACGCCACAGCTGACGCACGCCCGCGCCGTCGCCGTCGACAGTGACACGTTCTACGTGGTCGGCGGCATTTCGTCGCAGTTCAGCATCCACAGCGTGACGCTCCCGGTGGACATTTGCCAGCTGTTCAGCTCGTCGAAGCACACGTGCCGCACCAACCGCGGCTGCTCGTTCGCGACGACCACCTTCGCCAACAGCACCGCGCGCCTCACCGAGTGCTTCTCGAGCGACCAGAAGGAGACGAAGAAGAGCGAGCTCACGTCGACCGCCTTCAACTGGGGCTCCGTGTGCGACGAGATGCTGCTCGGCACGCGCAACTGCAGCAGCTTCGTCACGTGCGACGAGTGCGCGACCGTCTTCCCGCACGAAAGCGGCCCGAGCTGCAAGTGGAGCAGCAACAAGCGGTGCTACAACGAGAAGCGCCCGAAAAACGAGACCGAGCCGCAAAAGTGCGAGGCGAGCGTGAGCAACTACACGGTCAGTGCGTGCGCTGGGTTCGGCACCTGCGCGTCTTGTCTTGCTGTCGGCGCTGCGGGCGGGAGGAGTTGCGTGTGGTCCACAAAGGTGAGACGATTTTTTTTCCCGAATAACCATTTGAAGTATGTGCCCCTT
Protein: 1000 (aa)
MPRARLQCFSFSIYTSEYQFGLCREWIDQLIVGGGGGDTHGHHQCKSCGMFRNCSTCLRSLNCGWCFVEENPIEGACVDGDFSGAAVECSSALNTSEPVQYSYAECPDLDECSLDIHDCHPNADCHNTRGSYVCQCRKGFLGDGKRKCDKTCDDVCMHGHCSNFPDYKCICDLGWTGADCSINCQCNNHSTCVKGVGICDECQDHTEGVHCEKCVVGSFGNATAGGCQPCSCNGHADKSAGLCDPKTGKCFCVDNTEGENCELCARNFYGDPKDSGRCYLQCQSRALLQETAVQGIGSFGVRTSPGECLWLLKLDASVANGSLIQFEVDDTMNVSCHSNAIYTFASVAEFSDKFGHKKLLNAVCDSASVVSESRTGEMAVYFRRTARCDGFNAVVRILSCGLGTCTPPFVCNGTRCACPPERHGPRCEHAGSAVCAQNCDAGTSVRVRELFSTQSVDKSLRHLRKTLPRFGNSVSADRRGFLWIFGGFSLTNGALNDIRQFDTKNRTWVQVTVDGTASKMPLGRFFHAAEIKAQSVFVHGGLGNDFEVFADLWEFNIHEQRWSELEGGREDAPGPLAGHTMNVIKEGEGEALVVVGGYRGERRRQREAASTEQNEASASESTESEQQAVRRTTESDGDLPKARRRRSGSAEPEKRGIVFQYDFERKAWSGLKVVGNPPELIFGHTTSYHVQAQVLYIFGGYQAVGGRIQMANRLYTLRKVKNVWTWNLLPTFDELNRPEENLPRARFLHSAIPFANFLAIHGGATQPANASDTLNAYVYKCNSYIRLSEGVEMSAAATPQLTHARAVAVDSDTFYVVGGISSQFSIHSVTLPVDICQLFSSSKHTCRTNRGCSFATTTFANSTARLTECFSSDQKETKKSELTSTAFNWGSVCDEMLLGTRNCSSFVTCDECATVFPHESGPSCKWSSNKRCYNEKRPKNETEPQKCEASVSNYTVSACAGFGTCASCLAVGAAGGRSCVWSTKVRRFFFPNNHLKYVPL
| Type | Start | End | Length |
| CDS |
260 |
277 |
18 |
| CDS |
333 |
712 |
380 |
| CDS |
832 |
1043 |
212 |
| CDS |
1679 |
3225 |
1547 |
| CDS |
3467 |
4309 |
843 |
| intron |
278 |
332 |
55 |
| intron |
713 |
831 |
119 |
| intron |
1044 |
1678 |
635 |
| intron |
3226 |
3466 |
241 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001850596 |
laminin subunit gamma-3 [Culex quinquefasciatus] gb|EDS32341.1| laminin subunit gamma-3 [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR011043 |
Galactose oxidase/kelch, beta-propeller |
|
| InterPro |
IPR003659 |
Plexin/semaphorin/integrin |
|
| InterPro |
IPR001881 |
EGF-like calcium-binding |
|
| InterPro |
IPR000742 |
Epidermal growth factor-like domain |
|
| InterPro |
IPR016201 |
Plexin-like fold |
|
| InterPro |
IPR013032 |
EGF-like, conserved site |
|
| InterPro |
IPR000152 |
EGF-type aspartate/asparagine hydroxylation site |
|
| InterPro |
IPR018097 |
EGF-like calcium-binding, conserved site |
|
| InterPro |
IPR006210 |
Epidermal growth factor-like |
|
| InterPro |
IPR002049 |
EGF-like, laminin |
|
| InterPro |
IPR024731 |
EGF domain, merozoite surface protein 1-like |
|
| InterPro |
IPR015915 |
Kelch-type beta propeller |
|
| Gene Ontology(BP) |
GO:0007275 |
multicellular organismal development |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0005509 |
calcium ion binding |
|
| Gene Ontology(MF) |
GO:0004872 |
receptor activity |
|
| Pfam |
PF13415.1 |
Galactose oxidase, central domain |
1.2e-17 |
| Pfam |
PF12947.2 |
EGF domain |
7.5e-11 |
| Pfam |
PF12661.2 |
Human growth factor-like EGF |
0.0018 |
| Pfam |
PF00053.19 |
Laminin EGF-like (Domains III and V) |
2.8e-11 |
| Pfam |
PF01344.20 |
Kelch motif |
1.5e-07 |
| Pfam |
PF13418.1 |
Galactose oxidase, central domain |
1.9e-26 |
| Pfam |
PF07645.10 |
Calcium-binding EGF domain |
2.2e-09 |
| Pfam |
PF00008.22 |
EGF-like domain |
0.0026 |
| Pfam |
PF13964.1 |
Kelch motif |
2.6e-13 |
| Pfam |
PF13854.1 |
Kelch motif |
1.4e-09 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.16025 |
| Pn.02990 |
| Pn.16623 |
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC014698 |
| A. gambiae |
AGAP008185 |
| N. vitripennis |
NV13207-PA |
| H. sapiens |
ENSP00000334219 |
| S. invicta |
SI2.2.0_14129 |
| H. melpomene |
HMEL011650-PA |
| D. plexippus |
DPOGS215815PA |
| H. sapiens |
ENSP00000367313 |
| P. humanus |
PHUM249660-PA |
| T. castaneum |
TC014697 |
| M. musculus |
ENSMUSG00000045039 |
| H. sapiens |
ENSP00000251268 |
| A. mellifera |
GB11186-PA |
| C. quinquefasciatus |
CPIJ009058 |
| A. aegypti |
AAEL014347 |
| A. mellifera |
GB14726-PA |
| T. castaneum |
TC014696 |
| D. melanogaster |
FBgn0031981 |
| B. mori |
BGIBMGA013556-TA |
| P. vanderplanki |
Pv.08226 |