MidgeBase gene description page [Pn.15898]
Outline
| Gene ID | Pn.15898 |
| Type | Protein coding gene |
| Scaffold | PnScaf33993 |
| Start | 4375 |
| End | 5527 |
| Direction | - |
Sequence
Transcript: 939 (bp)
ATGAAGAAAAAGGTTCTTCTGATGGGCAAGAGTGGTGCCGGAAAGACGTCAATGCGGTCGATTATCTTCGCAAACTACATTGCTCGAGACACAAGACGGCTGGGAGCGACCATAGATGTCGAGCATAGTCATGTTAGATTTTTAGGCAATTTGGTTCTTAATCTGTGGGATTGCGGAGGACAAGAGTCGTACATGGATCAATATTTCCAGTCTCAAAAGGAGAACATTTTCAGAAATGTGGAGGTTCTGATCTATGTGTTTGACGTGGAAAGTCGAGAGTTTGACAAAGACATGCATTATTACCAGTCATGCTTGGAGGCCATCCTCAACTACTCGCCCGAAGCAAAAATCTTCTGCCTCATTCACAAAATGGACTTGATCGTTGAGGATCAGCGAGATTCAATCTTCAAGACTCGCCAGGAGGATTTGAAGAAACTTAGTCTGCCACTCGAGTGCAAAGCCTTTAGAACTTCGATCTGGGATGAAACTCTCTACAGAGCTTGGAGTTCCATCGTTTATCAACTTATTCCCAACGTAAAAGCCCTCGAAAGTTCCTTGCATCAGTTCGCGACAATCCTGGATGCCGACGAAGTGCTTTTGTTCGAGCGTGCGACATTCTTGGTGATATCTCACTGTCAACTGAAGCATCACTCGGACTCTCATCGCTTTGAAAAAGTATCGAACATCGTGAAACAATTCAAGCTCTCGTGCGCAAAGCTGGGCGCGAAATTTCAATCAATGGAAGTACGAAACAGTAAGTTTGCTGCCTTCATCGACACATTCACCAGCAATACGTATATCATGGTTGTACAGTCAGCTGATCCCGAGACTCCCTCGGAGTCGACTCTAATTAATATAAGGAACGCTAGGAAATACTTTGAGGAATTAGAGAATCCACTAAACAACTCAATTTCATCATACCACTCGATGAACTACAAC
Protein: 313 (aa)
MKKKVLLMGKSGAGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQESYMDQYFQSQKENIFRNVEVLIYVFDVESREFDKDMHYYQSCLEAILNYSPEAKIFCLIHKMDLIVEDQRDSIFKTRQEDLKKLSLPLECKAFRTSIWDETLYRAWSSIVYQLIPNVKALESSLHQFATILDADEVLLFERATFLVISHCQLKHHSDSHRFEKVSNIVKQFKLSCAKLGAKFQSMEVRNSKFAAFIDTFTSNTYIMVVQSADPETPSESTLINIRNARKYFEELENPLNNSISSYHSMNYN
| Type | Start | End | Length |
| CDS |
4378 |
5201 |
824 |
| CDS |
5304 |
5406 |
103 |
| CDS |
5516 |
5527 |
12 |
| intron |
5202 |
5303 |
102 |
| intron |
5407 |
5515 |
109 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001658202 |
hypothetical protein AaeL_AAEL001188 [Aedes aegypti] gb|EAT47750.1| conserved hypothetical protein [Aedes aegypti] |
1e-154 |
| InterPro |
IPR006762 |
Gtr1/RagA G protein |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(CC) |
GO:0005737 |
cytoplasm |
|
| Gene Ontology(MF) |
GO:0005525 |
GTP binding |
|
| Pfam |
PF00025.16 |
ADP-ribosylation factor family |
4.9e-08 |
| Pfam |
PF13555.1 |
P-loop containing region of AAA domain |
0.28 |
| Pfam |
PF01926.18 |
50S ribosome-binding GTPase |
7.1e-06 |
| Pfam |
PF09439.5 |
Signal recognition particle receptor beta subunit |
0.041 |
| Pfam |
PF04670.7 |
Gtr1/RagA G protein conserved region |
6.2e-103 |
| Pfam |
PF08477.8 |
Miro-like protein |
3.7e-06 |
| Pfam |
PF10662.4 |
Ethanolamine utilisation - propanediol utilisation |
0.014 |
| Pfam |
PF00071.17 |
Ras family |
1.4e-08 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. humanus |
PHUM310710-PA |
| D. plexippus |
DPOGS208709PA |
| H. sapiens |
ENSP00000369899 |
| H. sapiens |
ENSP00000410630 |
| P. vanderplanki |
Pv.05339 |
| A. mellifera |
GB17040-PA |
| H. sapiens |
ENSP00000364077 |
| C. quinquefasciatus |
CPIJ007526 |
| D. melanogaster |
FBgn0037647 |
| H. sapiens |
ENSP00000262850 |
| B. mori |
BGIBMGA003355-TA |
| M. musculus |
ENSMUSG00000070934 |
| A. aegypti |
AAEL001188 |
| N. vitripennis |
NV13473-PA |
| A. gambiae |
AGAP002991 |
| H. melpomene |
HMEL015255-PA |
| S. invicta |
SI2.2.0_13568 |
| T. castaneum |
TC010924 |