MidgeBase gene description page [Pn.15881]
Outline
| Gene ID | Pn.15881 |
| Type | Protein coding gene |
| Scaffold | PnScaf33917 |
| Start | 72 |
| End | 1542 |
| Direction | - |
Sequence
Transcript: 783 (bp)
ATGTCAAACGACAAGCTGGTGCTTTACTACGTTTCATCAAGCCCGTCGTGTCGCGCTGCCTACTTAGTTGCACGCGAACTCGGCGTTGATGTTGAATTGAAATACATAAACCTCTTCCGCGAAGACAACCTCTCGCCTGAATACCTCGCCATCAATCCATCGGGGACGGTGCCGGCTCTCGTCGATGGCGAAGTCACTGTGTGGGACAGTCACGCAATTATGATTTATTTAACGGAGAAGTTCGATGAAAATTCTCAATTGTACCCTAGAGACTTTCTTAAACGAACTCTGGTCAACGAGCGTCTGTTTTATGAGGCTAGCTATCTGTTTGCGCGTCTTTTCGAGATATGTGATCCGCTGTGCGATGGCCGCGAGAAGATTATTTCGCCGGATAAAATTGATCGGGTTATTCGCGGCTACCGGAGCGTAGAGGACTTCTTTATCAAGGACAATCAGTACATTGCGGCGGAGACAATGACGCTTGCCGACTTCAGCATTTGGACGACAATGAGCACGCTCAACTATTTGGTGCCGATTAATGTCGAGAAGTTTCCTCGATTGTTTAACTACTTAAAGCGATTCGAGAGCCATCCCGGCTACGAGATCAACCGCGAGGGAGCCGAACGCCATGCCAACTATGTCCTTAAATGCCTCCATGGAATGGAATACAATGGAAAAATCGCCGTAGAAATATTCAGAGAATCTAAAAACTACTCGCACATCATTCACGAGTGGGACAATATCACCAGCAAGGAATTCGAGGACAAAATTGCCGACGAAAAT
Protein: 261 (aa)
MSNDKLVLYYVSSSPSCRAAYLVARELGVDVELKYINLFREDNLSPEYLAINPSGTVPALVDGEVTVWDSHAIMIYLTEKFDENSQLYPRDFLKRTLVNERLFYEASYLFARLFEICDPLCDGREKIISPDKIDRVIRGYRSVEDFFIKDNQYIAAETMTLADFSIWTTMSTLNYLVPINVEKFPRLFNYLKRFESHPGYEINREGAERHANYVLKCLHGMEYNGKIAVEIFRESKNYSHIIHEWDNITSKEFEDKIADEN
| Type | Start | End | Length |
| CDS |
75 |
208 |
134 |
| CDS |
336 |
633 |
298 |
| CDS |
871 |
1120 |
250 |
| CDS |
1442 |
1542 |
101 |
| intron |
209 |
335 |
127 |
| intron |
634 |
870 |
237 |
| intron |
1121 |
1441 |
321 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ADK66967 |
glutathione s-transferase [Chironomus riparius] |
5e-45 |
| InterPro |
IPR010987 |
Glutathione S-transferase, C-terminal-like |
|
| InterPro |
IPR017933 |
Glutathione S-transferase/chloride channel, C-terminal |
|
| InterPro |
IPR012336 |
Thioredoxin-like fold |
|
| InterPro |
IPR004045 |
Glutathione S-transferase, N-terminal |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF13409.1 |
Glutathione S-transferase, N-terminal domain |
1.3e-11 |
| Pfam |
PF13410.1 |
Glutathione S-transferase, C-terminal domain |
0.00049 |
| Pfam |
PF02798.15 |
Glutathione S-transferase, N-terminal domain |
1.2e-10 |
| Pfam |
PF13417.1 |
Glutathione S-transferase, N-terminal domain |
1.3e-15 |
| Pfam |
PF00043.20 |
Glutathione S-transferase, C-terminal domain |
0.00033 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.00653 |
| Pn.01309 |
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA009951-TA |
| T. castaneum |
TC004941 |
| T. castaneum |
TC004942 |
| C. quinquefasciatus |
CPIJ018632 |
| P. vanderplanki |
Pv.00578 |
| D. melanogaster |
FBgn0063495 |
| D. melanogaster |
FBgn0063492 |
| C. quinquefasciatus |
CPIJ018631 |
| D. melanogaster |
FBgn0063498 |
| P. vanderplanki |
Pv.07941 |
| D. plexippus |
DPOGS204831PA |
| B. mori |
BGIBMGA010093-TA |
| D. melanogaster |
FBgn0063499 |
| D. melanogaster |
FBgn0063496 |
| A. gambiae |
AGAP009194 |
| C. quinquefasciatus |
CPIJ018629 |
| D. plexippus |
DPOGS200213PA |
| T. castaneum |
TC004448 |
| T. castaneum |
TC004442 |
| B. mori |
BGIBMGA002279-TA |
| T. castaneum |
TC004450 |
| T. castaneum |
TC004446 |
| D. melanogaster |
FBgn0063494 |
| H. melpomene |
HMEL014394-PA |
| D. plexippus |
DPOGS200212PA |
| D. melanogaster |
FBgn0027590 |
| C. quinquefasciatus |
CPIJ018627 |
| P. vanderplanki |
Pv.05574 |
| T. castaneum |
TC004444 |
| A. aegypti |
AAEL007962 |
| A. aegypti |
AAEL007951 |
| P. vanderplanki |
Pv.00579 |
| T. castaneum |
TC004447 |
| B. mori |
BGIBMGA010094-TA |
| D. melanogaster |
FBgn0063497 |
| H. melpomene |
HMEL006527-PA |
| T. castaneum |
TC003345 |
| A. gambiae |
AGAP009193 |
| T. castaneum |
TC003104 |
| D. melanogaster |
FBgn0034335 |
| T. castaneum |
TC003103 |
| P. vanderplanki |
Pv.07493 |
| P. vanderplanki |
Pv.10206 |
| T. castaneum |
TC004449 |
| A. aegypti |
AAEL007948 |
| H. melpomene |
HMEL010769-PA |
| D. melanogaster |
FBgn0063491 |
| D. plexippus |
DPOGS207576PA |
| T. castaneum |
TC004443 |
| T. castaneum |
TC004940 |
| A. aegypti |
AAEL007964 |
| T. castaneum |
TC004445 |
| D. melanogaster |
FBgn0063493 |