MidgeBase gene description page [Pn.15875]
Outline
| Gene ID | Pn.15875 |
| Type | Protein coding gene |
| Scaffold | PnScaf33763 |
| Start | 5 |
| End | 1553 |
| Direction | - |
Sequence
Transcript: 1458 (bp)
ATGAACAAGATCCTCAACGACGCGCAGTCGGAGGACCTGGTGGTCGCCTACAACGAGATAATCAGCGAGATTTTTCCGTGGTATCAGAACGAGACGAAGGCGTGCACGGACGCGCTCGAGGAGACCATGAACGACCACTCGAAGGGCGACTTGCTCGACGACCTCATCATCGAGACGGCCGACAGCGAGTACTACATGATGTCCAACTTCAGCGTGCCCGAGGGCCTCATCAAGAACGAGGCCGAGTACCTGCAGACGATCTTCTTCAACGAGAAGGACAACCGCGCGTGCATGCTGTGCAAGAAGGAGGGCGAGTGCTCGTCCGAGGAGGAGGGCCGGCTGCTCTACTGCGGCCACAACACGTGGGTGCACACAAACTGCGCACTCTGGTCCGCCGAGGTCTACGAGGAGATCGACGGCTCCCTCCAGAACGTGCACAGCGCCATCTCGCGGGGGCGGCTCATCAAGTGCAGCAAGTGCGGCATCAAGGGCGCGACGGTCGGCTGTAATTTCAAGAACTGCGGCGAGCAGTATCACTTTCAGTGCGCGCGCTCAATGTGCGAGTTCCGCACGGACAAGAGCGTCTACTGTCCGCTGCACGTGTCGAAGGAGTCGGACGAGGAGAAGCCGCAGCTCGAGAGCAACTTTCAAGTCAATCGCTCGGTGTACGTGGAGCTGGACCGGAGGAAAAAGAAGACGGTGGAGGCGTCGAAGGTGCAGTTCCTGATCGGCTCGCTGTGCGTCACGAAAATGGGCCGAATCGTGCCGATCTTGAGCGACGCCGGCGACTACCTCGTGCCGGTCGATTTCGAGTGCACGCGGCTGTTCTGGTCGTCGAAGCACCCGTGGAACATCGTCGAGTACAAAATAAAGATTTCGATCCAGCGATCCAACTATCTCTCAATGACCATCGACAAGGGCATCAACCTTACCGTCGACCACAGCAAGAGCGTGCAGACCATCCAGAAGAATCTCAAGCAGATCGCGCTCTTCCACAGCTCCATCGCCAAGGAGCAGGAGACGATGGTGGTGGAGGAGACGCAGGACGAGGAGGCGCCGAATCAGACGAACGACCTCTTCCCGCCCGAAATCAAGGCGGCCATTTTCGAGGACCTCCCGCACGACGTCCTCGACGGCATCTCCATGTTCGACATCTTCCCGAAAGACCCGGCCGACGCCAAGACGACCTTCTACAATCAGGGCTCCGACGAGGACGACGAGAGCAGCAAGAGCAACCAGGTGAACGGCGACGGCGACGCCGACAGTGACTTCAACGGCCTCCTCAACTCGATCGAGTCCGAGTTCTCGAGCGAGTACGCGACGTTCGGCAAGCGAGACGATCCCGAGCCGAAGAAGCGGAAAGTCAGCAACGCCGCCATCTCGGACAGCAACAACAATCCGGGCACGAAGGTCGAGCAGGAGCCGAAATCGAGTGCCGGCATGTCGCTGCAGAAATTC
Protein: 486 (aa)
MNKILNDAQSEDLVVAYNEIISEIFPWYQNETKACTDALEETMNDHSKGDLLDDLIIETADSEYYMMSNFSVPEGLIKNEAEYLQTIFFNEKDNRACMLCKKEGECSSEEEGRLLYCGHNTWVHTNCALWSAEVYEEIDGSLQNVHSAISRGRLIKCSKCGIKGATVGCNFKNCGEQYHFQCARSMCEFRTDKSVYCPLHVSKESDEEKPQLESNFQVNRSVYVELDRRKKKTVEASKVQFLIGSLCVTKMGRIVPILSDAGDYLVPVDFECTRLFWSSKHPWNIVEYKIKISIQRSNYLSMTIDKGINLTVDHSKSVQTIQKNLKQIALFHSSIAKEQETMVVEETQDEEAPNQTNDLFPPEIKAAIFEDLPHDVLDGISMFDIFPKDPADAKTTFYNQGSDEDDESSKSNQVNGDGDADSDFNGLLNSIESEFSSEYATFGKRDDPEPKKRKVSNAAISDSNNNPGTKVEQEPKSSAGMSLQKF
| Type | Start | End | Length |
| CDS |
8 |
11 |
4 |
| CDS |
100 |
1553 |
1454 |
| intron |
12 |
99 |
88 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ABM68621 |
AAEL000054-PA [Aedes aegypti] |
1e-122 |
| InterPro |
IPR015722 |
Histone-lysine N-methyltransferase |
|
| InterPro |
IPR003888 |
FY-rich, N-terminal |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(MF) |
GO:0018024 |
histone-lysine N-methyltransferase activity |
|
| Pfam |
PF05964.9 |
F/Y-rich N-terminus |
4.3e-13 |
| Pfam |
PF13832.1 |
PHD-zinc-finger like domain |
1.2e-06 |
| Pfam |
PF14425.1 |
Immunity protein Imm3 |
0.78 |
| Pfam |
PF01105.19 |
emp24/gp25L/p24 family/GOLD |
0.021 |
| Pfam |
PF13771.1 |
PHD-like zinc-binding domain |
2.4e-13 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC004768 |
| P. vanderplanki |
Pv.07627 |
| C. quinquefasciatus |
CPIJ013972 |
| B. mori |
BGIBMGA010221-TA |
| S. invicta |
SI2.2.0_07789 |
| H. melpomene |
HMEL013536-PA |
| A. aegypti |
AAEL000054 |
| A. gambiae |
AGAP002741 |
| A. mellifera |
GB16330-PA |
| D. plexippus |
DPOGS212487PA |
| P. humanus |
PHUM079870-PA |
| P. vanderplanki |
Pv.07626 |
| D. melanogaster |
FBgn0003862 |