MidgeBase gene description page [Pn.15843]
Outline
| Gene ID | Pn.15843 |
| Type | Protein coding gene |
| Scaffold | PnScaf33469 |
| Start | 1232 |
| End | 6242 |
| Direction | - |
Sequence
Transcript: 2814 (bp)
ATGGTTGAAAACAATCCGCTGATGGGCTCGATTGCAGCTCGATGGGATCCCAAAAACCTCGAAATTCGCACAATGTCGGTTGAGAAGACACTGGAGCCGCTGGTCCTGCAGGTCACCACTCTGGTCAACAGCAAATCGACGACGAAGAAGAAGAAAGGCAAATCCAAGCGAGCATCGGCGCTGGTTGCGGCAGTCGAGAAGGCGACCGAGAACTTCATCGAGCGCGGCGAGCAGATTGCCTACGAGAATCCCGACATCACGCAGGAGATGCTGACGGCAGTGGAGGAGGTGCGCAAGACGGGCCTGTCGATGAGCGTAGCGGCACGCGAGTTCAGCGAGGATCCGTGCAGCTCGCTGAAGCGCGGCAACATGGTGCGCGCCGCTCGCAATCTCCTCTCGGCCGTGACGCGCCTCCTCATCCTCGCCGACATGGTGGACGTGCACTTGCTGCTGAAGTCGCTGCACGTCGTCGAGGACGACCTGGACAAGCTGCGCGACGCCTCGAGCCAGGACGAGCTCATCTCGAACATGCGTCAGTTCGGTCGGAATGCGAACGAGCTGATCAAGCAGGCCGCGAAGCGCCAGCACGAGCTGAAGGATCCGCAGCTGCGCGACGACCTCGCCGCCGCACGCGCCATCCTCAAGAAGCACTCCACCATGCTGCTGACGGCCTCGAAGGTCTACGTCCGCCATCCCGAGCTCGATCTCGCCAAAATCAATCGCGACTACGTGCTGAAGCAGGTGTGCGAGGCGGTCAACACGATCAGCGACGTAGCACAGGGCAAGGCGTCGACGCCGCAGGACACTTTCAGCGGCGCGGGTGAACTCGCCGCCGCTCTCGACGACTTCGACGAGGGCATCATCATGGACCCGCTCGTGTACAGCGAGGTGCGCTCGCGGCCGTCACTCGAGGAGCGCCTCGAGAGCATCATCAGCGCGGCGGCGCTCATGGCCGACGCCGACTGCACGCGGGACGAGCGTCGCGAGCGAATTGTCGCCGAATGCAATGCCGTGCGCCAGGCGCTGCAGGACCTGCTGTCCGAGTACATGTCCAACATGGGCACCAAGGACCGCACGCCGGAGCTGGAGCGCGCAATCGGCCAGATGTACCGCAAGACGAAGGACTTGCGGCGCCAGCTGCGCAAGGCCGTCGTCGACCACGTGTCGGACTCGTTCCTCGAGACGAACATGCCGCTGCTGGACCTGATCGAGGCGGCGCGCTCCGGCCAGGAGAAGAAGGTGCACGAGCGAGCCGAGGTGTTCACGAAGCACGCTGAGAAGCTCGTCGAGGTCGCCAACCTCGTGTGTAGCATGTCGAACAACGAGGACGGCGTGAAGATGGTGCGCTATGCAGCTGCCCAGATCGAGACCCTCTGCCCGCAGGTCATCAATGCGGCGCTCATTCTCGCCGCCCGGCCCAACTCGAAGGTCGCGCAGGAGAACATGGACTCGTACCGGCAGGCGTGGGAGAACCAGGTGCGAATCCTCACCGAGGCCGTCGACGACATCACCACCATCGACGACTTCCTCGCCGTGTCCGAGAATCACATTCTCGAGGACGTCAACAAGTGCGTGCTTGCGCTGCAGGAGGGCGACGCTCTCGATCTGCGCAACACGGCCGGCGCTATCCAGGGACGCTCGGCGCGCGTCTGCCACGTCGTCGAGGCCGAGATGGACAACTACGAGCCGTGCATCTACACGAAGCGCGTCCTCGAGGCCGTCAAGGTGCTGCGCGATCAGGTCATGTCGAAGTTTGCGCAGCGCGTCGATGTTGCTGTCAACGCACTGTCAAGCAACTCGCCCAAGGACGTCGACGAGAATGACTTTATCGATGCGTCGCGACTCGTTTATGATGGTGTGCGCGAAATACGACGCGCTGTGCTCATGAATCGCAACGAGGAAGAGTTGGATCCGGAGGACATCGAAGATGAGCAGTACACGCTTGAGACGAGGAGCAAGTTTCGCATTTCGAGCTCGGAAGAGTTGGACACAGACACCGAGTTTGAGCCAGTCGAGGACATGACCATTGAGACGCGTAGCCGCTCCAGCGCACACACAGGCGACCAGACCATTGACGAGTATCCAGACATTAGTGGAATCACAACGGCCAGAGAAGCAATGCGCAAGATGAATGAGGAGGACAAGCAGAAGATTATGCAACAAGTCGAGCTCTTCCGTCGCGAGAAGCTGACGTTCGACTCGGAGGTCGCCAAGTGGGACGACACCGGCAACGACATCATCTATCTGGCCAAGCACATGTGCATGATTATGATGGAGATGACAGACTTCACGCGCGGCCGCGGCCCCCTCAAGACCACCATGGACGTCATCAATGCGGCGAAGAAGATTTCGGAGGCCGGCACGAAGCTGGACAAGCTGACGCGCGAAATCGCCGACCAGTGTCCCGAGAGCTCCACCAAGAAAGATCTGCTCGCATACCTGCAACGAATCGCTCTCTACTGCCACCAGATTCAGATTACGTCAAAGGTCAAGGCTGACGTTCAAAACATTTCCGGCGAATTGATTGTGTCTGGCTTGGACAGCGCAACCTCCCTCATTCAGGCAGCTAAGAACCTCATGAACGCTGTCGTCTACACGGTCAAATATTCCTACGTAGCATCTACGAAATACACGCGACAAGGAACTGTTTCGTCACCCATCGTGGTATGGAAGATGAAAGCACCCGAAAAGAAGCCACTCGTGAGACCCGAGAAGCCGGAGGAAGTTCGAGCAAAGGTTCGACGGGCATCGCAGAAAAAGACTCAAAATCCGGTGCATGCACTGTCAGAGTTCCAGAGTCCGGCAGATAACATC
Protein: 938 (aa)
MVENNPLMGSIAARWDPKNLEIRTMSVEKTLEPLVLQVTTLVNSKSTTKKKKGKSKRASALVAAVEKATENFIERGEQIAYENPDITQEMLTAVEEVRKTGLSMSVAAREFSEDPCSSLKRGNMVRAARNLLSAVTRLLILADMVDVHLLLKSLHVVEDDLDKLRDASSQDELISNMRQFGRNANELIKQAAKRQHELKDPQLRDDLAAARAILKKHSTMLLTASKVYVRHPELDLAKINRDYVLKQVCEAVNTISDVAQGKASTPQDTFSGAGELAAALDDFDEGIIMDPLVYSEVRSRPSLEERLESIISAAALMADADCTRDERRERIVAECNAVRQALQDLLSEYMSNMGTKDRTPELERAIGQMYRKTKDLRRQLRKAVVDHVSDSFLETNMPLLDLIEAARSGQEKKVHERAEVFTKHAEKLVEVANLVCSMSNNEDGVKMVRYAAAQIETLCPQVINAALILAARPNSKVAQENMDSYRQAWENQVRILTEAVDDITTIDDFLAVSENHILEDVNKCVLALQEGDALDLRNTAGAIQGRSARVCHVVEAEMDNYEPCIYTKRVLEAVKVLRDQVMSKFAQRVDVAVNALSSNSPKDVDENDFIDASRLVYDGVREIRRAVLMNRNEEELDPEDIEDEQYTLETRSKFRISSSEELDTDTEFEPVEDMTIETRSRSSAHTGDQTIDEYPDISGITTAREAMRKMNEEDKQKIMQQVELFRREKLTFDSEVAKWDDTGNDIIYLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTKLDKLTREIADQCPESSTKKDLLAYLQRIALYCHQIQITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVYTVKYSYVASTKYTRQGTVSSPIVVWKMKAPEKKPLVRPEKPEEVRAKVRRASQKKTQNPVHALSEFQSPADNI
| Type | Start | End | Length |
| CDS |
1235 |
1396 |
162 |
| CDS |
1570 |
1686 |
117 |
| CDS |
1767 |
2189 |
423 |
| CDS |
2550 |
2617 |
68 |
| CDS |
2881 |
2953 |
73 |
| CDS |
3119 |
3129 |
11 |
| CDS |
3181 |
3247 |
67 |
| CDS |
3925 |
5076 |
1152 |
| CDS |
5205 |
5788 |
584 |
| CDS |
6005 |
6117 |
113 |
| CDS |
6199 |
6242 |
44 |
| intron |
1397 |
1569 |
173 |
| intron |
1687 |
1766 |
80 |
| intron |
2190 |
2549 |
360 |
| intron |
2618 |
2880 |
263 |
| intron |
2954 |
3118 |
165 |
| intron |
3130 |
3180 |
51 |
| intron |
3248 |
3924 |
677 |
| intron |
5077 |
5204 |
128 |
| intron |
5789 |
6004 |
216 |
| intron |
6118 |
6198 |
81 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001657216 |
actin binding [Aedes aegypti] gb|EAT44925.1| actin binding [Aedes aegypti] |
0.0 |
| InterPro |
IPR006077 |
Vinculin/alpha-catenin |
|
| InterPro |
IPR001033 |
Alpha-catenin |
|
| Gene Ontology(BP) |
GO:0007155 |
cell adhesion |
|
| Gene Ontology(CC) |
GO:0015629 |
actin cytoskeleton |
|
| Gene Ontology(MF) |
GO:0005198 |
structural molecule activity |
|
| Gene Ontology(MF) |
GO:0045296 |
cadherin binding |
|
| Pfam |
PF00639.16 |
PPIC-type PPIASE domain |
0.0081 |
| Pfam |
PF01044.14 |
Vinculin family |
3.5e-298 |
| Pfam |
PF07739.8 |
TipAS antibiotic-recognition domain |
0.018 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC001360 |
| N. vitripennis |
NV50125-PA |
| M. musculus |
ENSMUSG00000060843 |
| H. sapiens |
ENSP00000441705 |
| A. aegypti |
AAEL003754 |
| T. castaneum |
TC004609 |
| D. melanogaster |
FBgn0010215 |
| D. plexippus |
DPOGS212904PA |
| D. plexippus |
DPOGS203361PA |
| B. mori |
BGIBMGA011888-TA |
| B. mori |
BGIBMGA011890-TA |
| H. sapiens |
ENSP00000384638 |
| H. sapiens |
ENSP00000347190 |
| C. quinquefasciatus |
CPIJ005773 |
| P. humanus |
PHUM450820-PA |
| H. sapiens |
ENSP00000441444 |
| S. invicta |
SI2.2.0_06652 |
| H. sapiens |
ENSP00000362849 |
| H. sapiens |
ENSP00000433786 |
| H. sapiens |
ENSP00000341500 |
| A. mellifera |
GB12545-PA |
| M. musculus |
ENSMUSG00000063063 |
| P. vanderplanki |
Pv.10390 |
| H. sapiens |
ENSP00000444675 |
| H. sapiens |
ENSP00000418191 |
| A. gambiae |
AGAP003424 |
| H. sapiens |
ENSP00000427821 |
| H. sapiens |
ENSP00000355398 |
| H. sapiens |
ENSP00000389714 |
| M. musculus |
ENSMUSG00000037815 |
| H. sapiens |
ENSP00000419295 |
| P. vanderplanki |
Pv.10391 |
| H. melpomene |
HMEL022513-PA |
| H. sapiens |
ENSP00000438476 |
| H. sapiens |
ENSP00000304669 |