MidgeBase gene description page [Pn.15812]
Outline
| Gene ID | Pn.15812 |
| Type | Protein coding gene |
| Scaffold | PnScaf33269 |
| Start | 21956 |
| End | 23297 |
| Direction | - |
Sequence
Transcript: 624 (bp)
ATGGCAAATAATCAACGCGGAGGAGGAATCCAACGTCCAAACGGATCGACTCAGAGCAAAATCTGTCAGTTCAAGTTGGTGCTTTTGGGAGAATCGGCGGTCGGTAAATCGTCACTTGTACTGAGATTTGTTAAAGGTCAATTTCATGAATACCAAGAGAGTACCATCGGGGCCGCTTTTCTGACGCAGACCGTGCATATTGACGAAACTGCAGTGAAATTCGAAATATGGGAACGTTATCATAGCTTAGCTCCAATGTATTATCGAGGCGCACAAGCGGCCATTGTGGTGTATGACATTCAAAATCAGGACAGTTTTTCTCGTGCTCAGACGTGGGTCAAAGAACTGCAACGACAGGCTTCGCCGAACATCGTTATAGCTTTGGCTGGAAATAAAGCGGATCTGGCAGCGAGTCGGGCTGTTGACTACGAAGAAGCAAAACAGTACGCTGACGAGAATGGATTACTATTCATGGAGACATCGGCAAAGACAGCAGTCAATGTGAATGAGATATTTTTAGCAATAGCGAAAAAACTTCCCAAAAATGAAGGCGCTGGGCAGCAACAAAATATACGTCCGCAGGCGGGTGAAACGAATAGAACGTCAGGGAACTGCTGCAACAAG
Protein: 208 (aa)
MANNQRGGGIQRPNGSTQSKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVHIDETAVKFEIWERYHSLAPMYYRGAQAAIVVYDIQNQDSFSRAQTWVKELQRQASPNIVIALAGNKADLAASRAVDYEEAKQYADENGLLFMETSAKTAVNVNEIFLAIAKKLPKNEGAGQQQNIRPQAGETNRTSGNCCNK
| Type | Start | End | Length |
| CDS |
21959 |
22056 |
98 |
| CDS |
22125 |
22293 |
169 |
| CDS |
22363 |
22488 |
126 |
| CDS |
23067 |
23297 |
231 |
| intron |
22057 |
22124 |
68 |
| intron |
22294 |
22362 |
69 |
| intron |
22489 |
23066 |
578 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001658691 |
rab5 [Aedes aegypti] gb|EAT40407.1| rab5 [Aedes aegypti] |
1e-100 |
| InterPro |
IPR002041 |
Ran GTPase |
|
| InterPro |
IPR005225 |
Small GTP-binding protein domain |
|
| InterPro |
IPR001806 |
Small GTPase superfamily |
|
| InterPro |
IPR003579 |
Small GTPase superfamily, Rab type |
|
| InterPro |
IPR020849 |
Small GTPase superfamily, Ras type |
|
| InterPro |
IPR003578 |
Small GTPase superfamily, Rho type |
|
| Gene Ontology(BP) |
GO:0006886 |
intracellular protein transport |
|
| Gene Ontology(BP) |
GO:0006913 |
nucleocytoplasmic transport |
|
| Gene Ontology(BP) |
GO:0007165 |
signal transduction |
|
| Gene Ontology(BP) |
GO:0006184 |
GTP catabolic process |
|
| Gene Ontology(BP) |
GO:0007264 |
small GTPase mediated signal transduction |
|
| Gene Ontology(BP) |
GO:0015031 |
protein transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0005525 |
GTP binding |
|
| Gene Ontology(MF) |
GO:0003924 |
GTPase activity |
|
| Pfam |
PF00025.16 |
ADP-ribosylation factor family |
5.5e-07 |
| Pfam |
PF01926.18 |
50S ribosome-binding GTPase |
0.05 |
| Pfam |
PF08477.8 |
Miro-like protein |
8.1e-15 |
| Pfam |
PF04670.7 |
Gtr1/RagA G protein conserved region |
0.011 |
| Pfam |
PF03080.10 |
Domain of unknown function (DUF239) |
0.03 |
| Pfam |
PF00009.22 |
Elongation factor Tu GTP binding domain |
0.032 |
| Pfam |
PF00735.13 |
Septin |
0.074 |
| Pfam |
PF00071.17 |
Ras family |
1.6e-53 |
| Pfam |
PF03193.11 |
Protein of unknown function, DUF258 |
0.038 |
| Pfam |
PF13191.1 |
AAA ATPase domain |
0.00053 |
| Pfam |
PF13401.1 |
AAA domain |
0.11 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA006045-TA |
| H. sapiens |
ENSP00000455563 |
| H. sapiens |
ENSP00000457972 |
| D. plexippus |
DPOGS201872PA |
| P. humanus |
PHUM091630-PA |
| H. melpomene |
HMEL013436-PA |
| C. quinquefasciatus |
CPIJ801783 |
| A. aegypti |
AAEL007845 |
| N. vitripennis |
NV15932-PA |
| H. sapiens |
ENSP00000450168 |
| H. sapiens |
ENSP00000273047 |
| M. musculus |
ENSMUSG00000000711 |
| H. sapiens |
ENSP00000447053 |
| T. castaneum |
TC014786 |
| S. invicta |
SI2.2.0_10350 |
| A. mellifera |
GB15021-PA |
| P. vanderplanki |
Pv.02209 |
| M. musculus |
ENSMUSG00000019173 |
| A. gambiae |
AGAP007901 |
| H. sapiens |
ENSP00000377440 |
| H. sapiens |
ENSP00000345689 |
| H. sapiens |
ENSP00000353444 |
| M. musculus |
ENSMUSG00000017831 |
| D. melanogaster |
FBgn0014010 |
| H. sapiens |
ENSP00000447895 |