MidgeBase gene description page [Pn.15788]
Outline
| Gene ID | Pn.15788 |
| Type | Protein coding gene |
| Scaffold | PnScaf33093 |
| Start | 1147 |
| End | 3339 |
| Direction | - |
Sequence
Transcript: 1476 (bp)
ATGGAGGCAATAAATTCGAGCCTCGTCGAGCGACGGCCGCAGGCGACTCACCAGCGAAAAGACTCAGAGTCGACGATCGCGAGCTCGGCGGCAGCCTACATTTCCAAAAGTCGCCAGCACGACCTGACCAGTGCACTGCAGGTTTCGCCCACGACTCAAACGAGCATGCAATTCGCGCGAAACGAAAACGTCCACCTTGGGCCGTCGATCCACCATCACTACTACAATGCGCCGCCCGATGTCGGCGAAAATTCACCCAAACGAGGCGACTCCTTCGCCTCGAGCGAGTCCGAAGACTTTTCCATGTCAAGAGAGCGCGTCGGCTTTTGCAAGCTAAAAAAAACTCTCGCGATTGCGGCGAGCGCGATATTCTTGATTGCCGCGATAGCGACTGTCGCTTCGATCACGTACGTTTTGCTCGCAAGCGACAACAGTGATGACACACGCACCACAACGACAAAGACACCGACGCCTTTTGTTACACGCGGAGAGTGGGGCGCTAACTCGCCCAAGGCGGGCATCAGAATGCTGCAGAGGCCGATCCAGAGGGTGATTGTGGCGCACACCGGCGGGGGCTCGTGCAGCGACTTGGAAACATGCAAATCTTTGGTAAAATCAATTCAAACCGAAGATCCCTTGCTCGACGACATTCCCTACAATTTTCTCGTGGGCGGCGATGGCAGAGTTTACGAGGGACGAGGTTTCTCGTTTGAGGGCCAGCACACGGCAAACATCGACGCGACCGAGTACAACAGCATCGGCATCTGCGTGGCCTTTATTGGAAATTATACGACGATTGAACCATCCGAGGAGCAAATGAAAGCTTTCAGAGAATTTCTCACGCTTGAGGAGATCAACGACGAATTTATTGTTGTGCTGCAGGATGACCTGATGTATAGGAAATCAAGAGCAGCCATGCTTGATAATGCCATCGGAAATTTAGAGAAATATTATCCGTTGCAGAGGACTTACAGACGCGAGGAGTGGAACGCAAGGGAAGCGAAGGGAAACGTTGGCTTTGATCGAACCATGAACTGGGTCATTCTATCGCATACAGTCACCTATGAATGTCGTAGCGAGGAAAGTTGCGCTTCCCAAATGAGATTACTTCAGAACACAAACATGAACAACCAGTCATATGCCGACATAGGTTTCCACTTTTATATTGGCGATGGCTTAGTGTTTGAGGGACGCGGTTGGGACTGGGTTGGAGCGCATTTTAAAAAGTACAACTATGATTCTGTCGGCATAGCGATGATTGGAGACTTCAGCACAACTGAGCCGACTCAAGCAATGCTCGACGCCCTAAAGACACTGTTGAATGAGGGCGAAGCTCTCGGAAAATTGACGGCCGACTACAAGGTCAATGGTAGGCAGGATATGGGAGAAGTTGGACCCGGTAATGCGTTCATGAATCACGTGAGGAAATGGTGCCGCTATGGCAACAGAACAGTGGGCAACCCTTGCGAAAACTTT
Protein: 492 (aa)
MEAINSSLVERRPQATHQRKDSESTIASSAAAYISKSRQHDLTSALQVSPTTQTSMQFARNENVHLGPSIHHHYYNAPPDVGENSPKRGDSFASSESEDFSMSRERVGFCKLKKTLAIAASAIFLIAAIATVASITYVLLASDNSDDTRTTTTKTPTPFVTRGEWGANSPKAGIRMLQRPIQRVIVAHTGGGSCSDLETCKSLVKSIQTEDPLLDDIPYNFLVGGDGRVYEGRGFSFEGQHTANIDATEYNSIGICVAFIGNYTTIEPSEEQMKAFREFLTLEEINDEFIVVLQDDLMYRKSRAAMLDNAIGNLEKYYPLQRTYRREEWNAREAKGNVGFDRTMNWVILSHTVTYECRSEESCASQMRLLQNTNMNNQSYADIGFHFYIGDGLVFEGRGWDWVGAHFKKYNYDSVGIAMIGDFSTTEPTQAMLDALKTLLNEGEALGKLTADYKVNGRQDMGEVGPGNAFMNHVRKWCRYGNRTVGNPCENF
| Type | Start | End | Length |
| CDS |
1150 |
1451 |
302 |
| CDS |
1661 |
1754 |
94 |
| CDS |
1847 |
1968 |
122 |
| CDS |
2029 |
2395 |
367 |
| CDS |
2749 |
3339 |
591 |
| intron |
1452 |
1660 |
209 |
| intron |
1755 |
1846 |
92 |
| intron |
1969 |
2028 |
60 |
| intron |
2396 |
2748 |
353 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFZ17967 |
hypothetical protein SINV_07288 [Solenopsis invicta] |
4e-36 |
| InterPro |
IPR015510 |
Peptidoglycan recognition protein |
|
| InterPro |
IPR002502 |
N-acetylmuramoyl-L-alanine amidase domain |
|
| InterPro |
IPR006619 |
Peptidoglycan recognition protein family domain, metazoa/bacteria |
|
| Gene Ontology(BP) |
GO:0009253 |
peptidoglycan catabolic process |
|
| Gene Ontology(MF) |
GO:0008745 |
N-acetylmuramoyl-L-alanine amidase activity |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Pfam |
PF01510.20 |
N-acetylmuramoyl-L-alanine amidase |
3.9e-34 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.05099 |
| N. vitripennis |
NV17163-PA |
| P. vanderplanki |
Pv.05100 |
| N. vitripennis |
NV17162-PA |