MidgeBase gene description page [Pn.15774]
Outline
| Gene ID | Pn.15774 |
| Type | Protein coding gene |
| Scaffold | PnScaf33047 |
| Start | 31004 |
| End | 39257 |
| Direction | - |
Sequence
Transcript: 780 (bp)
ATGATGGTGCTTTTTTCGTGAGTTACGATACTTTTGTCTCTTACCGTCTTCCTTAATATGGTGGCTGAAACAATGCCGGCCACTTCTGATGCTGTGCCTCTCTTAGGAACGTATTTCAATTGCATCATGTTCATGGTTGCGTCGTCAGTAGTTTCAACAATTTTAATATTAAATTATCATCATCGTAATGCCGATACGCACGAGATGTCAGAATGGATTCGAGTGGTGTTCCTGTACTGGCTTCCGTGCATACTCCGAATGTCTCGTCCGGGTCAGGATCCGTGTGATTGCACGCCGAGCTTGCAAGGTGGAAGTAATGAGAAAACAAAGCAAATGAGCGAAGTCGAGCTGCGAGAACGGTCATCGAAGTCGCTGCTGGCAAACGTTCTCGACATCGACGATGACTTTCGCTGCAATCATCGGTGCAACACATTGCCTCACAATCCCACGTACTACCGCACCGTGTATCGACAGGGTGAGGACGGGAGTCTGGGCCCGGTCGGGGGCGGAGCTGTGCCGCCTCCGAGTGTCGGCGGCCGCCTCCACGAGACCGTGTCGCATACGTGCTTGAGCTCATCAGCCGAATACGAATTAGCACTGATACTGAAGGAGCTTCGTGTCATCACAGATGCGTTACGAAGTGAAGATGAGAAAAGTGAAATAACAAAGGACTGGAAATTTGCAGCAATGGTGGTTGACCGGCTGTGCCTTATCATATTTACATTGTTTACAATAATTTCAACGGTAGCAGTCTTATTTAGTGCACCCAATTTCCTCCTT
Protein: 260 (aa)
MMVLFSXVTILLSLTVFLNMVAETMPATSDAVPLLGTYFNCIMFMVASSVVSTILILNYHHRNADTHEMSEWIRVVFLYWLPCILRMSRPGQDPCDCTPSLQGGSNEKTKQMSEVELRERSSKSLLANVLDIDDDFRCNHRCNTLPHNPTYYRTVYRQGEDGSLGPVGGGAVPPPSVGGRLHETVSHTCLSSSAEYELALILKELRVITDALRSEDEKSEITKDWKFAAMVVDRLCLIIFTLFTIISTVAVLFSAPNFLL
| Type | Start | End | Length |
| CDS |
31007 |
31153 |
147 |
| CDS |
34643 |
34916 |
274 |
| CDS |
35751 |
35893 |
143 |
| CDS |
37591 |
37700 |
110 |
| CDS |
38427 |
38457 |
31 |
| CDS |
38631 |
38686 |
56 |
| CDS |
39239 |
39257 |
19 |
| intron |
31154 |
34642 |
3489 |
| intron |
34917 |
35750 |
834 |
| intron |
35894 |
37590 |
1697 |
| intron |
37701 |
38426 |
726 |
| intron |
38458 |
38630 |
173 |
| intron |
38687 |
39238 |
552 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_309153 |
AGAP000962-PA [Anopheles gambiae str. PEST] gb|AAU12511.1| nicotinic acetylcholine receptor subunit alpha 7, partial [Anopheles gambiae] gb|EAA04911.3| AGAP000962-PA [Anopheles gambiae str. PEST] |
1e-114 |
| InterPro |
IPR006029 |
Neurotransmitter-gated ion-channel transmembrane domain |
|
| InterPro |
IPR006201 |
Neurotransmitter-gated ion-channel |
|
| Gene Ontology(BP) |
GO:0006811 |
ion transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Pfam |
PF02932.11 |
Neurotransmitter-gated ion-channel transmembrane region |
7.6e-42 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes