MidgeBase gene description page [Pn.15772]
Outline
| Gene ID | Pn.15772 |
| Type | Protein coding gene |
| Scaffold | PnScaf33047 |
| Start | 8734 |
| End | 12948 |
| Direction | - |
Sequence
Transcript: 3489 (bp)
ATGGAAAGTGAGAAAAGCCAAGTCGAGCCAATATTCAAGTACATACGAATAGCGTCAGATTTGCGTGATATATTGAAGAGTGACTCAATTTCGGTTTGTTATCCATCGTCAAAAATCTTATTTATCGGAACAAACTGGGGACAACTCTATATTCTCGACCATGAAGGTAATGCAACGAGTGATCAAAAGTTCCCCAAGCATATGGTATCAATTAACATGATATCAGCTGACTCCAAAGGAGAATTCATTGCGACATGTAGTGATGACGGAAAAATACACATAAACTGCCTCTACTCAATGGACAACAGTATTTACTTGACCGTTGAGAAACAAGTCAAGTGTATTGAGCTAGATCCGAACTACGGACTTAGTGGGAAACGATTCATCGTCGGTGATCAACAGTTGAAGCTCTATGAGAAGACACTGCTTAGAGGCATAAAGCCAACAGTACTCTCAGAATCCGAGGGCATCGTGAACTCTCTAAAGTGGAATGGATCTTTTGTAGCGTGGTCAAATGCCATTGGTGTGAGGGTATATGATCTGACTGAAAGGTGTTCACTCGGTCTGATTAAATGGGAAGAGCCACAAGAAGGGAAGCTCACAGACTTTCGATGCAATCTCCTCTGGCACAACAATACGCTGTTCATCGGATGGGCTGAAACAATCAGAATATGTGTGATAAGAAAGAGAAGTGTCGTTGAGATTTCTACAAGAAATTTGCCAGGCTACATTGTGGACCCCATTTCGATGTTCAAGACCGAGTTTTACGTTTGCGGTCTTGCCCCATTGGAGAAGAACCAGCTAGTCGTACTTGGTCTTCCCAAGGAGAAAGAGGAGGACAATAAATCACAGCGGCCAGTTCTGTGCGTCATTCAATATAATTCAAATGAATATGAAGAGCTCTGCACTGACAGCCTAACACTAAAAGACTACGAGTTCTACACGTCCAACGACTACAGCTTGGCATGTTTAATAGACGAAAACAAATATTTTGTGGTTTCTCCAAAGGACATCGTTACCGCTTCATTGTACGAAACAGATGATCGAATCAAGTATCTCATAGAGCATGATCATTTGTTCAGCGAATACAAGTGCAAATCAAATGAATACGAAGAAATTGATGAGAATAATTACTTACTAGTTGCATTAGTGCTGACCGCACCAAAGAATTTCGATAGGCGGAACGCAATGCGTGACACTTGGATTAGTTTAAGGCCGTGGCAACTAAATGACAGTTTTTATCAGAACGAAGTTATTTACATTCCACCGGAACAGTCAAATGGATTTCTCGAACACGAAACTGTTGAGCAGCAAGAGAAAAGCCTGAAAAATTACCAAAAATGGTTGTCTTCTAGTAAGCACAGAGGATCAAACATTAAAGTTCCAAATCTTAAAATTAAAAATCTCTTCGTCATCGGAATGAAAGACCTCGACAGTGATACAACGAAAAGAATCAGAGCGGAAAATGATGTCTACAGCGACTTGCTTCTGCTCGAAGATCTTAAAGACTCATACAAAAATCTAACGCTGAAACTACTAAGTGCACTAGAAAGAATAAATTATGTTACGCCCAACTTTAAATACTTGCTCAAATGTGACGACGACTCGTACGTCAAGCTAGATTACTTAGCATTCGATCTCTTAGAATATGCCAAAAAGAAGACAACGAGAAAGAATCTCGAGCTCTATTGGGGCTTTTTTAATGGTCGTGCGAACATTAAGAAATCGGGGCAGTGGAAAGAAGTCAATTACGACTTATGTGACCGCTACTTGCCCTACGCACTGGGCGGTGGTTACGTCATATCAAAGAATCTCGTAACATACCTTGGGAATCACAGTAAATACCTTAATCGATACGAGAGTGAAGACATATCAATGGGTACATGGCTCTCGCCATTCAGAAACATTCATAGGAGGCACGATCCTCGATTCGATACTACTTACATGCCTCGCAAGTGCAAGACTTATCATATAGTAATGCACAAGAGGACAGTTGAAGATATGCGTGAAATACACAAGGGAAATCAGTGCTTTAGCGAGGTTACATATGAAGAAAGTAGAAAACCGGTTGACCAATACGAGAAAGCACTGGATGTGATACGAGAGAAGGGTGGAAAGTTTTCGATGACACAGATCGCGCGACTCTACGTCGATCATCTTCTCAAAAGACAGAAGTACGAGGAAGCTGCAAAGTTGTGTCTGAGCGTGTACGGCAATAACAAGGACTTGTGGGAGGAGGAGGTGTACAAGTTTGTGAAAGTCAAGCAACTGCGAGCCATTAGCTCCTATTTACCGCGAACAAACGAGTGCAAGCTTAACCCGCAGGTTTACGAGATGGTGATGTACGAGTACTTGCAGTATGATAAGCCCGGGTTTCTCAATTTGATCAAGGAATGGCAACCGAGTCTCTACAACACGACAGCCGTGATCAATGCCATCCAAATGAACTTTGACAAGAAGGAAAAGCGAATTCTTTTGGAGGCACTGGCGATCCTTTATTCGCACGAAAAAGAGTATGACAAGGCCGTGACGATGTACATTAAATTGGAGCATAAGGACGTCTTCACCCTCATCAAAAACCACAAACTCTATGCGGTGATCAAGCCCATGATCATTGAACTTCTGAAACTAGATAGCGAAAAAACCATCAGCGTCCTCCTCGGTCAAAAACAAATACCGCCAGCTGAAATTGTCGAGAAACTAGAAGAGTACGAAAATGAGTCGTTTGTCTACCAGTACTTGGATGCCTTCAAGAAAACCGATTCCACGGGGAAATTCGACTGGAAATTAATAAATCTCTACGCGAAGTACGACCGCGAAAAATTACTACCGTTATTGAGGAAGTCAAACAGTTATAAACTAGAGTTGGCCTACGAACTCTGCAAAGTCAACTCGTTCTACCCCGAAATGGTCTACGTGCTCGAGCAAATGGGCAACACCAACGAGGCGCTTGAGGTCATAATGAAGAAGATCGGCAACGTTCGGATGGCCGTCGATTTCTGCTGTGAACACAACGACATGCAGTTGTGGGAGTACTTGATCAACGAAAGTTTCGAAAAGCCGGAAATTATCAAGCTTTTGATGGACGGCATATCGGGATCTGGCTACTTGGTCGACCCACAGATACTCATCGATCGGCTGCGCGTGGGACAAGAAATTCCCGAACTGAAAAGCGCTCTCATCAGAATGCTCACCGGCTACAGTCTTCAAGTCTCCATACACGGCGGTTGCAATCAAATTCTCAAGACAGATTATTTTGACGTGTTCAACAAGCTCATCAAGCAGCAGAACCGAGCGATGTATTTCGGGGGTCAAACGGTCTGCAGCCTCTGTCAGAGGAATATCGTTGGCGTAAAGGACAGGAACACAAACAAGACGCCGACAGACATTATCATTTTCAATTGCAAACACATTTTCCACGAGTCATGCTGCGTTACTGATAGATTCGATCTTGATCACTGCTCGATCTGTATTCCGACGAGACGGACC
Protein: 1163 (aa)
MESEKSQVEPIFKYIRIASDLRDILKSDSISVCYPSSKILFIGTNWGQLYILDHEGNATSDQKFPKHMVSINMISADSKGEFIATCSDDGKIHINCLYSMDNSIYLTVEKQVKCIELDPNYGLSGKRFIVGDQQLKLYEKTLLRGIKPTVLSESEGIVNSLKWNGSFVAWSNAIGVRVYDLTERCSLGLIKWEEPQEGKLTDFRCNLLWHNNTLFIGWAETIRICVIRKRSVVEISTRNLPGYIVDPISMFKTEFYVCGLAPLEKNQLVVLGLPKEKEEDNKSQRPVLCVIQYNSNEYEELCTDSLTLKDYEFYTSNDYSLACLIDENKYFVVSPKDIVTASLYETDDRIKYLIEHDHLFSEYKCKSNEYEEIDENNYLLVALVLTAPKNFDRRNAMRDTWISLRPWQLNDSFYQNEVIYIPPEQSNGFLEHETVEQQEKSLKNYQKWLSSSKHRGSNIKVPNLKIKNLFVIGMKDLDSDTTKRIRAENDVYSDLLLLEDLKDSYKNLTLKLLSALERINYVTPNFKYLLKCDDDSYVKLDYLAFDLLEYAKKKTTRKNLELYWGFFNGRANIKKSGQWKEVNYDLCDRYLPYALGGGYVISKNLVTYLGNHSKYLNRYESEDISMGTWLSPFRNIHRRHDPRFDTTYMPRKCKTYHIVMHKRTVEDMREIHKGNQCFSEVTYEESRKPVDQYEKALDVIREKGGKFSMTQIARLYVDHLLKRQKYEEAAKLCLSVYGNNKDLWEEEVYKFVKVKQLRAISSYLPRTNECKLNPQVYEMVMYEYLQYDKPGFLNLIKEWQPSLYNTTAVINAIQMNFDKKEKRILLEALAILYSHEKEYDKAVTMYIKLEHKDVFTLIKNHKLYAVIKPMIIELLKLDSEKTISVLLGQKQIPPAEIVEKLEEYENESFVYQYLDAFKKTDSTGKFDWKLINLYAKYDREKLLPLLRKSNSYKLELAYELCKVNSFYPEMVYVLEQMGNTNEALEVIMKKIGNVRMAVDFCCEHNDMQLWEYLINESFEKPEIIKLLMDGISGSGYLVDPQILIDRLRVGQEIPELKSALIRMLTGYSLQVSIHGGCNQILKTDYFDVFNKLIKQQNRAMYFGGQTVCSLCQRNIVGVKDRNTNKTPTDIIIFNCKHIFHESCCVTDRFDLDHCSICIPTRRT
| Type | Start | End | Length |
| CDS |
8737 |
9015 |
279 |
| CDS |
9088 |
10225 |
1138 |
| CDS |
10367 |
11368 |
1002 |
| CDS |
11611 |
11751 |
141 |
| CDS |
11822 |
12477 |
656 |
| CDS |
12676 |
12948 |
273 |
| intron |
9016 |
9087 |
72 |
| intron |
10226 |
10366 |
141 |
| intron |
11369 |
11610 |
242 |
| intron |
11752 |
11821 |
70 |
| intron |
12478 |
12675 |
198 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001658175 |
light protein [Aedes aegypti] gb|EAT47723.1| light protein [Aedes aegypti] |
1e-158 |
| InterPro |
IPR015943 |
WD40/YVTN repeat-like-containing domain |
|
| InterPro |
IPR002659 |
Glycosyl transferase, family 31 |
|
| InterPro |
IPR000547 |
Clathrin, heavy chain/VPS, 7-fold repeat |
|
| Gene Ontology(BP) |
GO:0006886 |
intracellular protein transport |
|
| Gene Ontology(BP) |
GO:0006486 |
protein glycosylation |
|
| Gene Ontology(BP) |
GO:0016192 |
vesicle-mediated transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0008378 |
galactosyltransferase activity |
|
| Pfam |
PF10366.4 |
Vacuolar sorting protein 39 domain 1 |
0.0078 |
| Pfam |
PF00515.23 |
Tetratricopeptide repeat |
1.8 |
| Pfam |
PF13176.1 |
Tetratricopeptide repeat |
0.02 |
| Pfam |
PF00637.15 |
Region in Clathrin and VPS |
3e-21 |
| Pfam |
PF00400.27 |
WD domain, G-beta repeat |
0.00056 |
| Pfam |
PF13639.1 |
Ring finger domain |
0.26 |
| Pfam |
PF01762.16 |
Galactosyltransferase |
2.1e-28 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC015204 |
| P. humanus |
PHUM253950-PA |
| M. musculus |
ENSMUSG00000041236 |
| A. mellifera |
GB16155-PA |
| D. melanogaster |
FBgn0002566 |
| B. mori |
BGIBMGA005526-TA |
| P. vanderplanki |
Pv.11914 |
| H. melpomene |
HMEL013113-PA |
| A. gambiae |
AGAP009174 |
| D. plexippus |
DPOGS209384PA |
| S. invicta |
SI2.2.0_15800 |
| A. aegypti |
AAEL001157 |
| C. quinquefasciatus |
CPIJ010406 |
| N. vitripennis |
NV50092-PA |
| H. sapiens |
ENSP00000379297 |
| H. sapiens |
ENSP00000309457 |