MidgeBase gene description page [Pn.15711]
Outline
| Gene ID | Pn.15711 |
| Type | Protein coding gene |
| Scaffold | PnScaf32525 |
| Start | 352 |
| End | 4235 |
| Direction | + |
Sequence
Transcript: 3000 (bp)
ATGAAGGAGTGGATTAAAATATCAATCATATTGTGCACTTATGGGTTCTTTCGCGAGCTTAGACCATCGGAGCCGTTTGTAACCGAATTTTTATCAAACGGAGTGTGGAAGAATGTTACAATCGACCAAGTGAATCGAGAGATTTATCCTTTCGGAACATACAGCTACCTCGTACAACTGTGTATCGTATTCTTAATAACCGATTTCTTGAGGTACAAGCCAATTATTATTTCATCGGCGTGTGTCGGTTTAGTACTGTGGTCGCTTTTGCTATGGACAAACGATTTACTGGGATTGTATTTTGTGCAAGTGTGCTATGGATTTTATATGGCATCCGAAGTTGCATACTACACGTATATTTATGCGAAAATCTCCAAGGAGCACTACCAAAAAGCGAGCGGCTACACAAGAGCAAGTCTTCTAGCTGCTCGATCACTTGCCGGTGCCCTAGCTCAACTTCTAATTTCGAACAAAATTATGAATGAGCGCGATCTCAACTTCATCTCATTGGGAGCACAAGTGGTGTCGCTGGCGGTCGCAATGTTTCTGCCAGCAGTTGGAATAAGTTTGTACATGTGGAAAGTTGATGAACCGATCGACGACGCTGAGGTTGAAAAATCGTTAGCCCTTCAAAATAGCGAAAAAGATATTAAGCCAAAATTCTCATTCAAACGTGCCACTACCTTAATCTGGACTCATTTTAAAGACTCCTACACAAACCGCACAGTTCTCATATGGTCGATTTGGTGGGCAGCAAACACTGCAGGTTTTCTTCTAATAATAAATTACATACAGGTGCTGTGGAACCATATTGATCCAAATCAGGAGCATTATTTCAATGGCTACGTCGAAACATTGATAACCCTCTTTGGTGGAATTTCGGCCACAATTGCCGGCTACTCGTTCAAGAACTCATTCCAGAAGTTTGACATCTATTTGCTTACATTGTGCTCATTTTTGCAAGGAGGCTTCACTCTCGTATCGTCTCTCACGAATAGTATCCTTGTGTGCTACGGATGCTACATTATGACCGGTTTTGTCTATCATTTCATAATTACTTTAGTCACAGCATTCGTAGCAAAGTTCCTACACGACGACTCATTTGCGTTGATATTCGGAATAAATACAATGACTGTGAAGATAGAAGGCAGCAAAATTTTCATCGCGAAAGGTCTCGACTTAAAATTGGAGGAGTTTTTCAACAAAATACTCGATCAATTTATAAGAAGTTGGTGGTCAAATGTGTCAAGCGATGAGACTTTCATCAATACCCTTAAATTGGAGTTGGCACGTGCAGTAAGAAGGCTCGCCATTCGATACAAGGATGTCGACTACGCACAAGTGATATCAACAAAACTCTTGCCGATAGCTTACACTCATTTCTCACAAATTGAGCATTCCATGAGAGGAGACTGTAGTGATGATCAAGTAGTAAATTTTTTCCTCGAGCTGCAAGCACCTCATCCTGCAACGACAAGCAGAGCAGCTGAGCTCCGTTATCTGCGGTCGTTATCAGAAAGTGTCATACCATACCTGTTCTCAATGAACAATTTCAAGTGCCGCGTTGCTTACGATATAGTACGCGAGCTTCTGACTAATTGGATATTTCTGCAAATAACAGACATCATTGCCGAACCAGATGTCATTAATACACTTGTGATATTAGCAACAAATCAAAAAACTAACGTAATTAAAAACCTTACAGACTACACCAGTGTAGAGCTACTGGAGAGTTTTAGTAAAATAAGAGACGCGAGCAATAAAGTGAATGAAAATGATCAGCGAGTCGATGGGAATTTTTTCAAGGACCAGCAAAAGTTGTATAATTTTATGCAATACTTTAAAAGTCAAAATTGCGGTGATGTAGAAATCTTAAAATTCTTGCTGGACGTCGAACATTTAAACGCGGAGCTAGAGAAATCAAGTGTAATTTCTAATCCGCAAAAGTTGTCGGCCCTTCAGAAAAAATCTGAACAACTTCTGGAACTTTATCGAGTTCACTTGTTTCGAGGAAACAGAGAGGAGAAGAGACCGAGTGACTTGATAGAGTGCTACAATCACGCAAAAAAGTATCTTGAATGTAAATGGAAGTATGACTTTTACAAGAGCGCAGACTACTATCAGTACATCTATGGCGAAAGAGAATCCTTTAATACTGCAAACAGCAATGATGGGGACGAGAGCCATGACATGCCTCCGATGTCGAGTCAAAAATTAACGGCTAAAATTAGGAGTGCAATAATGAAAACAGTGGTCGATGGCGGAATAGAGGATGACATTCAGGTGTATGACGCCATGGATGCTACAAGTAATAGCCCTGTTCACTATTACAACTCGATGGCTGTCAAATTAAGAAAAGAGAAAGGGCAGGATTTGGACAGTTTTATGAATATACTTTTTCAATCAATCGAACAAGAAGCTGACATTGGCGAGGATATCGTTGCGACGCAGAAATTAATAGAATGTCAACGACATAGCCGGATTAAAATGGGAAATGTCGAACTCTATCGGAATTTATTTAATTTATCTGGACAGTCTTCAGCTGTCCTCAATCAATTTAATGCAAGTTCGACTTCATGTATTCACACCCAAGAGCAGAGTCTTCTTTATCTTCTTTCGAAGATAATTAAAACCCATGACATTCTTCTGAGGGTTATTGCAAACTTTGTAAATTTCTTGCCTGATTGCAATAAAATCATATCTATGGTAATACGGAAAGTTGCGGAGAAGCTCATAACGCAGGCCGTCATTGCTCATCTTATTGGAGAGTTGCAGGAAAAAATTTTCGACCAACCTTCTACGCAAAAAATTGATAAGGCGGAGGAGCAAGCGTCGAGAAGAAGTTTGGCAGCTGAGCGATTAGAAAAGATCAAGTATGGAATCTCCACTAATTTAAATTATCTACAGAATCCAACTTTAAACAAGCACTTGGTCTACTCACTCCTAGATGTCATAATAACTGAAGGATTTGAAGAGCTAAACCCTAATCTTATGCCAAAG
Protein: 1000 (aa)
MKEWIKISIILCTYGFFRELRPSEPFVTEFLSNGVWKNVTIDQVNREIYPFGTYSYLVQLCIVFLITDFLRYKPIIISSACVGLVLWSLLLWTNDLLGLYFVQVCYGFYMASEVAYYTYIYAKISKEHYQKASGYTRASLLAARSLAGALAQLLISNKIMNERDLNFISLGAQVVSLAVAMFLPAVGISLYMWKVDEPIDDAEVEKSLALQNSEKDIKPKFSFKRATTLIWTHFKDSYTNRTVLIWSIWWAANTAGFLLIINYIQVLWNHIDPNQEHYFNGYVETLITLFGGISATIAGYSFKNSFQKFDIYLLTLCSFLQGGFTLVSSLTNSILVCYGCYIMTGFVYHFIITLVTAFVAKFLHDDSFALIFGINTMTVKIEGSKIFIAKGLDLKLEEFFNKILDQFIRSWWSNVSSDETFINTLKLELARAVRRLAIRYKDVDYAQVISTKLLPIAYTHFSQIEHSMRGDCSDDQVVNFFLELQAPHPATTSRAAELRYLRSLSESVIPYLFSMNNFKCRVAYDIVRELLTNWIFLQITDIIAEPDVINTLVILATNQKTNVIKNLTDYTSVELLESFSKIRDASNKVNENDQRVDGNFFKDQQKLYNFMQYFKSQNCGDVEILKFLLDVEHLNAELEKSSVISNPQKLSALQKKSEQLLELYRVHLFRGNREEKRPSDLIECYNHAKKYLECKWKYDFYKSADYYQYIYGERESFNTANSNDGDESHDMPPMSSQKLTAKIRSAIMKTVVDGGIEDDIQVYDAMDATSNSPVHYYNSMAVKLRKEKGQDLDSFMNILFQSIEQEADIGEDIVATQKLIECQRHSRIKMGNVELYRNLFNLSGQSSAVLNQFNASSTSCIHTQEQSLLYLLSKIIKTHDILLRVIANFVNFLPDCNKIISMVIRKVAEKLITQAVIAHLIGELQEKIFDQPSTQKIDKAEEQASRRSLAAERLEKIKYGISTNLNYLQNPTLNKHLVYSLLDVIITEGFEELNPNLMPK
| Type | Start | End | Length |
| CDS |
352 |
563 |
212 |
| CDS |
635 |
936 |
302 |
| CDS |
987 |
1607 |
621 |
| CDS |
2308 |
2498 |
191 |
| CDS |
2559 |
4232 |
1674 |
| intron |
564 |
634 |
71 |
| intron |
937 |
986 |
50 |
| intron |
1608 |
2307 |
700 |
| intron |
2499 |
2558 |
60 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001846444 |
conserved hypothetical protein [Culex quinquefasciatus] gb|EDS43661.1| conserved hypothetical protein [Culex quinquefasciatus] |
1e-111 |
| InterPro |
IPR013996 |
PX-associated, sorting nexin 13 |
|
| InterPro |
IPR002666 |
Reduced folate carrier |
|
| InterPro |
IPR016196 |
Major facilitator superfamily domain, general substrate transporter |
|
| InterPro |
IPR003114 |
Phox-associated domain |
|
| Gene Ontology(BP) |
GO:0006810 |
transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005542 |
folic acid binding |
|
| Gene Ontology(MF) |
GO:0008518 |
reduced folate carrier activity |
|
| Pfam |
PF02984.14 |
Cyclin, C-terminal domain |
0.06 |
| Pfam |
PF01770.13 |
Reduced folate carrier |
6.9e-125 |
| Pfam |
PF02194.10 |
PXA domain |
2.9e-32 |
| Pfam |
PF07690.11 |
Major Facilitator Superfamily |
6.7e-07 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.00304 |