MidgeBase gene description page [Pn.15693]

Outline

Link to gbrowse

Gene ID Pn.15693
Type Protein coding gene
Scaffold PnScaf32338
Start 36
End 3036
Direction +

Sequence

Transcript: 894 (bp)

 ATGAAACTGGAGCAGCTCCGTCAGCAATATCCGATAGGCGAGGATCGCAAGAAAGTCGACGACGTCAGTGAATTGCATAAGCTCAAGGTGCTGATAAGGCGCGGCATCATAAAGACGAAACGTGATCAGACACTGACCCATTTGCGGATCTTTGTCAACATCCTCGTCGCCATCCTCCTCGGATGGCTTTTCATCGGCTCCGGAACAGATGGATCGCGTGTTCTCGCCAACTACAATCTTATGTTTGCCATTCTCATTCATCACGTGTTCTCCACAATGATGCTCACCATTCTGACGTTCCCAACAGAGAAGTCAACGGTGCTTCGCGAGAACTTCAACCGATGGTACTCGGTGCGAAGCTACTACATATCCAATACGCTCATCGATCTGCCGGTGACAATTTTGTCGTGCCTGCTCTTTTCGGTTGTCATCTACATCATGGTCGGATGGCCGATGGAAGTCGATCGATTCTCCGTCTTCTTCATCGTGAGCCTGCTAATTGTTATGATTGCGCAAGCCATTGGCCTCATCATCGGCACATGCTGTAATGTCATTAATGGAACTTTCCTCGGTCCGATACTCGCCGTGCCAGCAATGATGCTGGCCGGATTCGGTGTGACGCTGAAGGATCTTCCGATGTTCCTGAAGTGGGGAAGTTACGTCTCCTACCTCCGCTACGGACTCGAAGGCTACGTCGGTGCTCTCTTCTACAAGCGCGAGCAGCTGAAATGCGACGCCATGTACTGTCACTACAAATATCCCGACAAGTTTCTGAAGGATATCGCAATGGAAGCCGATCAGTTCATGCATGACATTGCCGCGCTCGTGTTCACGCTTGTCTTTCTTCGCGTCGTGTGCTATTATTTGCTGAAATGGCGCATTGTGCTGAGTCGT 

Protein: 298 (aa)

 MKLEQLRQQYPIGEDRKKVDDVSELHKLKVLIRRGIIKTKRDQTLTHLRIFVNILVAILLGWLFIGSGTDGSRVLANYNLMFAILIHHVFSTMMLTILTFPTEKSTVLRENFNRWYSVRSYYISNTLIDLPVTILSCLLFSVVIYIMVGWPMEVDRFSVFFIVSLLIVMIAQAIGLIIGTCCNVINGTFLGPILAVPAMMLAGFGVTLKDLPMFLKWGSYVSYLRYGLEGYVGALFYKREQLKCDAMYCHYKYPDKFLKDIAMEADQFMHDIAALVFTLVFLRVVCYYLLKWRIVLSR 
Type Start End Length
CDS 36 333 298
CDS 587 843 257
CDS 2541 2577 37
CDS 2653 2815 163
CDS 2895 3033 139
intron 334 586 253
intron 844 2540 1697
intron 2578 2652 75
intron 2816 2894 79

Auto annotation result

Program/Analysis Accession Description Score/Expectation
BLASTP/NCBI-nr XP_310233 AGAP009463-PA [Anopheles gambiae str. PEST] gb|EAA45250.4| AGAP009463-PA [Anopheles gambiae str. PEST] 1e-105
InterPro IPR020064 ABC transporter, G1-like
InterPro IPR013525 ABC-2 type transporter
Gene Ontology(CC) GO:0016020 membrane
Gene Ontology(CC) GO:0016021 integral to membrane
Gene Ontology(MF) GO:0005524 ATP binding
Pfam PF01061.19 ABC-2 type transporter 8.4e-37
Pfam PF12679.2 ABC-2 family transporter protein 0.16
Pfam PF06423.7 GWT1 3.3
Pfam PF01312.14 FlhB HrpN YscU SpaS Family 0.52

Expression level (RPKM)

Paralog/Ortholog genes

Paralogous genes

Gene ID
Pn.15885
Pn.00864
Pn.02964
Pn.00866
Pn.04052
Pn.05833

Orthologous genes

Species Gene ID
C. quinquefasciatus CPIJ007190
P. humanus PHUM154210-PA
C. quinquefasciatus CPIJ019125
H. melpomene HMEL006781-PA
P. humanus PHUM610130-PA
H. melpomene HMEL014574-PA
B. mori BGIBMGA005203-TA
D. plexippus DPOGS204358PA
A. mellifera GB17229-PA
A. aegypti AAEL013372
C. quinquefasciatus CPIJ012364
H. sapiens ENSP00000339744
P. vanderplanki Pv.17069
P. vanderplanki Pv.17417
D. melanogaster FBgn0031516
N. vitripennis NV14844-PA
P. vanderplanki Pv.05629
H. sapiens ENSP00000420245
H. sapiens ENSP00000381464
H. sapiens ENSP00000420100
D. plexippus DPOGS205649PA
H. sapiens ENSP00000381467
C. quinquefasciatus CPIJ801608
T. castaneum TC007467
A. gambiae AGAP009850
H. sapiens ENSP00000381475
A. aegypti AAEL008672
H. sapiens ENSP00000291524
T. castaneum TC007466
D. plexippus DPOGS212638PA
C. quinquefasciatus CPIJ007191
P. vanderplanki Pv.07334
B. mori BGIBMGA005202-TA
D. melanogaster FBgn0031220
P. vanderplanki Pv.07333
T. castaneum TC007074
H. melpomene HMEL014575-PA
H. melpomene HMEL006594-PA
H. sapiens ENSP00000406874
H. melpomene HMEL006780-PA
B. mori BGIBMGA005094-TA
P. vanderplanki Pv.06644
D. melanogaster FBgn0031449
N. vitripennis NV16927-PA
A. aegypti AAEL008629
D. plexippus DPOGS212605PA
H. sapiens ENSP00000414541
P. vanderplanki Pv.07332
S. invicta SI2.2.0_00064
N. vitripennis NV14845-PA
H. sapiens ENSP00000343820
D. melanogaster FBgn0025683
B. mori BGIBMGA005226-TA
A. mellifera GB19012-PA
T. castaneum TC008454
D. plexippus DPOGS212609PA
C. quinquefasciatus CPIJ802036
H. sapiens ENSP00000304111
H. melpomene HMEL005297-PA
D. plexippus DPOGS205105PA
T. castaneum TC007047
M. musculus ENSMUSG00000024030
P. humanus PHUM349840-PA
A. aegypti AAEL008138
P. humanus PHUM347630-PA
P. humanus PHUM602230-PA
A. mellifera GB16644-PA
P. humanus PHUM453210-PA
H. sapiens ENSP00000417667
H. sapiens ENSP00000434318
S. invicta SI2.2.0_03712
N. vitripennis NV10274-PA
A. gambiae AGAP009463
A. mellifera GB11259-PA
A. aegypti AAEL008635
H. sapiens ENSP00000354995
T. castaneum TC008293
D. melanogaster FBgn0032167
A. mellifera GB12359-PA
N. vitripennis NV11347-PA
N. vitripennis NV10033-PA
A. gambiae AGAP001858
D. melanogaster FBgn0020762