MidgeBase gene description page [Pn.15693]
Outline
Gene ID | Pn.15693 |
Type | Protein coding gene |
Scaffold | PnScaf32338 |
Start | 36 |
End | 3036 |
Direction | + |
Sequence
Transcript: 894 (bp)
ATGAAACTGGAGCAGCTCCGTCAGCAATATCCGATAGGCGAGGATCGCAAGAAAGTCGACGACGTCAGTGAATTGCATAAGCTCAAGGTGCTGATAAGGCGCGGCATCATAAAGACGAAACGTGATCAGACACTGACCCATTTGCGGATCTTTGTCAACATCCTCGTCGCCATCCTCCTCGGATGGCTTTTCATCGGCTCCGGAACAGATGGATCGCGTGTTCTCGCCAACTACAATCTTATGTTTGCCATTCTCATTCATCACGTGTTCTCCACAATGATGCTCACCATTCTGACGTTCCCAACAGAGAAGTCAACGGTGCTTCGCGAGAACTTCAACCGATGGTACTCGGTGCGAAGCTACTACATATCCAATACGCTCATCGATCTGCCGGTGACAATTTTGTCGTGCCTGCTCTTTTCGGTTGTCATCTACATCATGGTCGGATGGCCGATGGAAGTCGATCGATTCTCCGTCTTCTTCATCGTGAGCCTGCTAATTGTTATGATTGCGCAAGCCATTGGCCTCATCATCGGCACATGCTGTAATGTCATTAATGGAACTTTCCTCGGTCCGATACTCGCCGTGCCAGCAATGATGCTGGCCGGATTCGGTGTGACGCTGAAGGATCTTCCGATGTTCCTGAAGTGGGGAAGTTACGTCTCCTACCTCCGCTACGGACTCGAAGGCTACGTCGGTGCTCTCTTCTACAAGCGCGAGCAGCTGAAATGCGACGCCATGTACTGTCACTACAAATATCCCGACAAGTTTCTGAAGGATATCGCAATGGAAGCCGATCAGTTCATGCATGACATTGCCGCGCTCGTGTTCACGCTTGTCTTTCTTCGCGTCGTGTGCTATTATTTGCTGAAATGGCGCATTGTGCTGAGTCGT
Protein: 298 (aa)
MKLEQLRQQYPIGEDRKKVDDVSELHKLKVLIRRGIIKTKRDQTLTHLRIFVNILVAILLGWLFIGSGTDGSRVLANYNLMFAILIHHVFSTMMLTILTFPTEKSTVLRENFNRWYSVRSYYISNTLIDLPVTILSCLLFSVVIYIMVGWPMEVDRFSVFFIVSLLIVMIAQAIGLIIGTCCNVINGTFLGPILAVPAMMLAGFGVTLKDLPMFLKWGSYVSYLRYGLEGYVGALFYKREQLKCDAMYCHYKYPDKFLKDIAMEADQFMHDIAALVFTLVFLRVVCYYLLKWRIVLSR
Type | Start | End | Length |
CDS |
36 |
333 |
298 |
CDS |
587 |
843 |
257 |
CDS |
2541 |
2577 |
37 |
CDS |
2653 |
2815 |
163 |
CDS |
2895 |
3033 |
139 |
intron |
334 |
586 |
253 |
intron |
844 |
2540 |
1697 |
intron |
2578 |
2652 |
75 |
intron |
2816 |
2894 |
79 |
Auto annotation result
Program/Analysis | Accession | Description | Score/Expectation |
BLASTP/NCBI-nr |
XP_310233 |
AGAP009463-PA [Anopheles gambiae str. PEST] gb|EAA45250.4| AGAP009463-PA [Anopheles gambiae str. PEST] |
1e-105 |
InterPro |
IPR020064 |
ABC transporter, G1-like |
|
InterPro |
IPR013525 |
ABC-2 type transporter |
|
Gene Ontology(CC) |
GO:0016020 |
membrane |
|
Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
Pfam |
PF01061.19 |
ABC-2 type transporter |
8.4e-37 |
Pfam |
PF12679.2 |
ABC-2 family transporter protein |
0.16 |
Pfam |
PF06423.7 |
GWT1 |
3.3 |
Pfam |
PF01312.14 |
FlhB HrpN YscU SpaS Family |
0.52 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Gene ID |
Pn.15885 |
Pn.00864 |
Pn.02964 |
Pn.00866 |
Pn.04052 |
Pn.05833 |
Orthologous genes
Species |
Gene ID |
C. quinquefasciatus |
CPIJ007190 |
P. humanus |
PHUM154210-PA |
C. quinquefasciatus |
CPIJ019125 |
H. melpomene |
HMEL006781-PA |
P. humanus |
PHUM610130-PA |
H. melpomene |
HMEL014574-PA |
B. mori |
BGIBMGA005203-TA |
D. plexippus |
DPOGS204358PA |
A. mellifera |
GB17229-PA |
A. aegypti |
AAEL013372 |
C. quinquefasciatus |
CPIJ012364 |
H. sapiens |
ENSP00000339744 |
P. vanderplanki |
Pv.17069 |
P. vanderplanki |
Pv.17417 |
D. melanogaster |
FBgn0031516 |
N. vitripennis |
NV14844-PA |
P. vanderplanki |
Pv.05629 |
H. sapiens |
ENSP00000420245 |
H. sapiens |
ENSP00000381464 |
H. sapiens |
ENSP00000420100 |
D. plexippus |
DPOGS205649PA |
H. sapiens |
ENSP00000381467 |
C. quinquefasciatus |
CPIJ801608 |
T. castaneum |
TC007467 |
A. gambiae |
AGAP009850 |
H. sapiens |
ENSP00000381475 |
A. aegypti |
AAEL008672 |
H. sapiens |
ENSP00000291524 |
T. castaneum |
TC007466 |
D. plexippus |
DPOGS212638PA |
C. quinquefasciatus |
CPIJ007191 |
P. vanderplanki |
Pv.07334 |
B. mori |
BGIBMGA005202-TA |
D. melanogaster |
FBgn0031220 |
P. vanderplanki |
Pv.07333 |
T. castaneum |
TC007074 |
H. melpomene |
HMEL014575-PA |
H. melpomene |
HMEL006594-PA |
H. sapiens |
ENSP00000406874 |
H. melpomene |
HMEL006780-PA |
B. mori |
BGIBMGA005094-TA |
P. vanderplanki |
Pv.06644 |
D. melanogaster |
FBgn0031449 |
N. vitripennis |
NV16927-PA |
A. aegypti |
AAEL008629 |
D. plexippus |
DPOGS212605PA |
H. sapiens |
ENSP00000414541 |
P. vanderplanki |
Pv.07332 |
S. invicta |
SI2.2.0_00064 |
N. vitripennis |
NV14845-PA |
H. sapiens |
ENSP00000343820 |
D. melanogaster |
FBgn0025683 |
B. mori |
BGIBMGA005226-TA |
A. mellifera |
GB19012-PA |
T. castaneum |
TC008454 |
D. plexippus |
DPOGS212609PA |
C. quinquefasciatus |
CPIJ802036 |
H. sapiens |
ENSP00000304111 |
H. melpomene |
HMEL005297-PA |
D. plexippus |
DPOGS205105PA |
T. castaneum |
TC007047 |
M. musculus |
ENSMUSG00000024030 |
P. humanus |
PHUM349840-PA |
A. aegypti |
AAEL008138 |
P. humanus |
PHUM347630-PA |
P. humanus |
PHUM602230-PA |
A. mellifera |
GB16644-PA |
P. humanus |
PHUM453210-PA |
H. sapiens |
ENSP00000417667 |
H. sapiens |
ENSP00000434318 |
S. invicta |
SI2.2.0_03712 |
N. vitripennis |
NV10274-PA |
A. gambiae |
AGAP009463 |
A. mellifera |
GB11259-PA |
A. aegypti |
AAEL008635 |
H. sapiens |
ENSP00000354995 |
T. castaneum |
TC008293 |
D. melanogaster |
FBgn0032167 |
A. mellifera |
GB12359-PA |
N. vitripennis |
NV11347-PA |
N. vitripennis |
NV10033-PA |
A. gambiae |
AGAP001858 |
D. melanogaster |
FBgn0020762 |