MidgeBase gene description page [Pn.15690]
Outline
| Gene ID | Pn.15690 |
| Type | Protein coding gene |
| Scaffold | PnScaf32298 |
| Start | 12165 |
| End | 14649 |
| Direction | - |
Sequence
Transcript: 834 (bp)
ATGCGCTTTATTCTCCTCTTTACTTCTGCAAACGCATGCATTGAAGATAACCTAGATATGGTGGAGTTTCTGGTATCACACGGAGCCGACGTGAATCGTAAAGATAACGAAGGCTGGACGCCACTTCACGCTACGTCTTCATGCGGGATTGTTAGTATAGCTAGATATTTAATTGAAAACGGTGCCGATCTGGCGTCTGTGAATAGTGATGGCGAATTACCGATTGATATTGCCGGCACAAACGCAATGATAGATCTACTTCAACATTATATCGACGAACAAGGAATTGATTGTGATGATGCGCGACAGCAAGAGGAGAAAATAATGCTGTCTGATGCTAAAAAATGGCTACGATCCGATGCAAGCGAGGCAGATCGACCGCATCCAAAAACGGGTGCGACCGCACTACACGTGGCAGCTGCAAAGGGATACACAAAAGTACTCAGTCTGCTGCTTGCTGGTCGAGCAGATGTCGATCGTCAGGATAATGATGGCTGGACGCCGCTTCATGCAGCTTGTTATTGGGGCAAGAAGGAAGCCGCACAAATGCTAATCGCATCGATGGCTGACATGGACATTTTAAATTACTCTAATCAGACCTGCATAGATATCGCTCCGAAGGAAATGATCCCATGGCTTGAGGAGCTCCGAAAGAACAATAAACGTACAAAACGTCGACCAACCAGTCAAATCAGGATTAGTGATAATAATTTAGAGAACAATATCGAGTCATCACCAAAAGTCATTCGTGTTGAGCTAAAAGCATCAACTGAACAACAGCAGCAGCAACAACAACAACTACCACAAAAAACAAATGGTATGTTTTCACGATTC
Protein: 278 (aa)
MRFILLFTSANACIEDNLDMVEFLVSHGADVNRKDNEGWTPLHATSSCGIVSIARYLIENGADLASVNSDGELPIDIAGTNAMIDLLQHYIDEQGIDCDDARQQEEKIMLSDAKKWLRSDASEADRPHPKTGATALHVAAAKGYTKVLSLLLAGRADVDRQDNDGWTPLHAACYWGKKEAAQMLIASMADMDILNYSNQTCIDIAPKEMIPWLEELRKNNKRTKRRPTSQIRISDNNLENNIESSPKVIRVELKASTEQQQQQQQQLPQKTNGMFSRF
| Type | Start | End | Length |
| CDS |
12168 |
12855 |
688 |
| CDS |
12937 |
13049 |
113 |
| CDS |
14617 |
14649 |
33 |
| intron |
12856 |
12936 |
81 |
| intron |
13050 |
14616 |
1567 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001848531 |
phosphatase 1 regulatory subunit 12b [Culex quinquefasciatus] gb|EDS28520.1| phosphatase 1 regulatory subunit 12b [Culex quinquefasciatus] |
1e-101 |
| InterPro |
IPR020683 |
Ankyrin repeat-containing domain |
|
| InterPro |
IPR002110 |
Ankyrin repeat |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF12796.2 |
Ankyrin repeats (3 copies) |
1.1e-30 |
| Pfam |
PF13857.1 |
Ankyrin repeats (many copies) |
2.1e-29 |
| Pfam |
PF13637.1 |
Ankyrin repeats (many copies) |
4.3e-32 |
| Pfam |
PF13606.1 |
Ankyrin repeat |
6.2e-22 |
| Pfam |
PF00023.25 |
Ankyrin repeat |
1.2e-31 |
| Pfam |
PF13935.1 |
Ead/Ea22-like protein |
0.053 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000446816 |
| N. vitripennis |
NV18107-PA |
| A. gambiae |
AGAP006665 |
| M. musculus |
ENSMUSG00000073557 |
| H. sapiens |
ENSP00000337897 |
| H. sapiens |
ENSP00000416769 |
| A. mellifera |
GB19581-PA |
| H. sapiens |
ENSP00000389168 |
| T. castaneum |
TC003209 |
| H. sapiens |
ENSP00000417159 |
| H. sapiens |
ENSP00000446855 |
| H. melpomene |
HMEL013867-PA |
| S. invicta |
SI2.2.0_05037 |
| P. humanus |
PHUM561400-PA |
| H. sapiens |
ENSP00000261207 |
| D. melanogaster |
FBgn0005536 |
| A. aegypti |
AAEL012753 |
| C. quinquefasciatus |
CPIJ006926 |
| S. invicta |
SI2.2.0_09944 |
| C. quinquefasciatus |
CPIJ006927 |
| P. vanderplanki |
Pv.17209 |
| D. plexippus |
DPOGS203899PA |
| H. sapiens |
ENSP00000384496 |
| H. sapiens |
ENSP00000449514 |
| M. musculus |
ENSMUSG00000019907 |
| H. sapiens |
ENSP00000349206 |
| B. mori |
BGIBMGA002008-TA |