MidgeBase gene description page [Pn.15686]
Outline
| Gene ID | Pn.15686 |
| Type | Protein coding gene |
| Scaffold | PnScaf32288 |
| Start | 791 |
| End | 3079 |
| Direction | + |
Sequence
Transcript: 1002 (bp)
ATGAAAGTGAAAATCGTGACATTATTGATCGTTTGCTGCCTGCAATTGCACGTTGATTGTCAGTCACAAATCAGCGAGTTTGAGCAATTCGTGCAAAAGTTCGGCAAAGTCTACGCCACGGAGGAGCAATACCAGGAGGCGCGCCGCAACTTCGAGAGTCACCTCGAGTTCATCGAGAGCTTCAACAAGGGCCGGCACCGAAAGTTCCGCATCAAGCTCAACCGCTTCGCCGACTTGAACAGCGGCCAGAAGGCGTCCATCAATGGCTTCAAGACGACAATTTTCGCGAGAGTTTTCAGCAAGTTTGAGCCAACCGAGACGGGCATGGAGAGGTCGGACGTCCCCGACGCCGTCGACTGGCGCGACAGCGGAGTCGTGACGCCGGTTCAGGACCAGGGCTATTCGTGCGGCGCTTGCTGGGCGTTTTCGACGGCAGGCTGCCTGGAGAGCGCGATCGCCATCAGGACGAAGCGGCCGGCGTTCAAGCTGTCGGAGCAGCAGTTCATCGACTGCAACTTCAACGCCCGTATCGGCAACTACGGATGCGATGGCGGCTTCATGACGATCGGGCTGTCGTATGCGCTGCTGCAGGACATCACGACCGGCTTTCGCTATCCGTACGTCGAGGTTAGACGACGGTGCACGTACAGCAAGCGGCAGGCACGCTTCTCGCTCTCGCAGCCCATCATGCTGCCGGCCGGCGACGAGGAGGCGCTCAAGGTGGCCGTCGCCACGCACGGACCGGTCGCGGTCGCCATCGACGCCTCGCTCGACTCCTTCTTCGCCTACTCGAGCGGCGTCTACTACGATCCGCTCTGCACCAAGTGGCTCAACCACGCGATGCTGGTCGTTGGCTATGGAACTGACCCGACTGCCGGTGACTTCTGGATAATCAAGAACTCGTGGGGCGACGAGTGGGGCGAAGATGGCTACGTGAGATTGGCGAGGAACAGAGACAATCACTGCGGAATCTCGCAGTATGCAGTTTATGTGAAGGTCAAC
Protein: 334 (aa)
MKVKIVTLLIVCCLQLHVDCQSQISEFEQFVQKFGKVYATEEQYQEARRNFESHLEFIESFNKGRHRKFRIKLNRFADLNSGQKASINGFKTTIFARVFSKFEPTETGMERSDVPDAVDWRDSGVVTPVQDQGYSCGACWAFSTAGCLESAIAIRTKRPAFKLSEQQFIDCNFNARIGNYGCDGGFMTIGLSYALLQDITTGFRYPYVEVRRRCTYSKRQARFSLSQPIMLPAGDEEALKVAVATHGPVAVAIDASLDSFFAYSSGVYYDPLCTKWLNHAMLVVGYGTDPTAGDFWIIKNSWGDEWGEDGYVRLARNRDNHCGISQYAVYVKVN
| Type | Start | End | Length |
| CDS |
791 |
883 |
93 |
| CDS |
1681 |
2007 |
327 |
| CDS |
2065 |
2193 |
129 |
| CDS |
2271 |
2562 |
292 |
| CDS |
2713 |
2758 |
46 |
| CDS |
2962 |
3076 |
115 |
| intron |
884 |
1680 |
797 |
| intron |
2008 |
2064 |
57 |
| intron |
2194 |
2270 |
77 |
| intron |
2563 |
2712 |
150 |
| intron |
2759 |
2961 |
203 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
AAK77918 |
cathepsin L 1 [Dictyocaulus viviparus] |
7e-61 |
| InterPro |
IPR013128 |
Peptidase C1A, papain |
|
| InterPro |
IPR013201 |
Proteinase inhibitor I29, cathepsin propeptide |
|
| InterPro |
IPR025661 |
Cysteine peptidase, asparagine active site |
|
| InterPro |
IPR025660 |
Cysteine peptidase, histidine active site |
|
| InterPro |
IPR000668 |
Peptidase C1A, papain C-terminal |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0008234 |
cysteine-type peptidase activity |
|
| Pfam |
PF03051.10 |
Peptidase C1-like family |
4.4e-06 |
| Pfam |
PF08246.7 |
Cathepsin propeptide inhibitor domain (I29) |
1.3e-10 |
| Pfam |
PF00112.18 |
Papain family cysteine protease |
5.5e-68 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.06457 |