MidgeBase gene description page [Pn.15680]
Outline
| Gene ID | Pn.15680 |
| Type | Protein coding gene |
| Scaffold | PnScaf32229 |
| Start | 44090 |
| End | 45674 |
| Direction | - |
Sequence
Transcript: 1218 (bp)
ATGTCGCGCAATTGGAGTAAAATCAAAGCATCAAATTATGCTATGTTGAGCATCAACCCACTGCGAAAAATTACCCAGGAGCAAAAAATCGAGCCCAATCCTTTGAAGAAATCAATCACACTGCAACTCGGTGATCCAACGATTTTTGGCAACTTCCCCGCTCCCGTTTCTCTCATAAACGCCCTTCAAAACGCTTTAACCAGAGACAAATTTCCATATAATTTGAGTTATGGAAAGTTTGAGGCGAGAAAGGCGGTAGCAGAATATTCGAAGCATCAGGGCTTAGTAACGGCCGATGACGTGATCTTATCAAGTGGCTGCAGCCATGCAATGGAGATGTGTGTTCTCACGCTTGCATCGCCAGGAGACAACGTCTTAATACCGAGACCATGCTATAACTACAAAACATGGATCGATGGGATGGGAATTGAAACCAAAGCATACAACTTGGATCCTGAAAGAGGCTGGGACATTGACCTCAAAAACATGGAAGAGTTGATTGACGAAAACACCAAATGCATCATTGTTAACAATCCCGGAAATCCATGCGGAAATGTTTTTTCAAAGGAGCACATCCAGGACATTTTGGCAGTTGCAGAACGCCATAAGCTGCCAATAGTGGCGGACGAGATTTATGAATTTTTCGTCTTTCCAGGCATCGAGTATCATTCGATGAGCTCGCTGTCAAACACTGTTCCCATTCTAACTTGCTCTGGCTTGTCGAAACGCTTTTTAGTCCCGGGCATCAGATTAGGTTGGGTGGTTATTCACGATCGAAACAATGCTTTGGGTGAGGTAAAGCAAGGCCTAAGAAATGTCAGCGCAAGAATTTTAGGACCAAACTCAACTGTTCAATACGCACTGCCAGAAATCCTGCAAAATACGCAACAACAGTTTTTTGTCAATAAAATGATGAAGATTGCGTATAACGCCGAGTTGGCTTATGGATTGCTGAGCAAAATTGAAGGCCTGAAGCCAGTCAAGTCCAAAGGCAGCATGTACAACATGGTGTCGATTGAGCTAGAAAAGTTTCCCGAGTTCAAAAACAGCCTGGAGTTTACTCAACAATTGATCCGTGAACAAAGCGTTCTCGTCTTCCCTTCAGATCCGTGCTTCAACTATGAGGGTTTCTTCCGCATCGTTTTGACCGTTACCGAAGAAATGATCAAGGAGGCTTGTGCTCGAATCGACGAATTTTGTAAAGCACACATTCGCACC
Protein: 406 (aa)
MSRNWSKIKASNYAMLSINPLRKITQEQKIEPNPLKKSITLQLGDPTIFGNFPAPVSLINALQNALTRDKFPYNLSYGKFEARKAVAEYSKHQGLVTADDVILSSGCSHAMEMCVLTLASPGDNVLIPRPCYNYKTWIDGMGIETKAYNLDPERGWDIDLKNMEELIDENTKCIIVNNPGNPCGNVFSKEHIQDILAVAERHKLPIVADEIYEFFVFPGIEYHSMSSLSNTVPILTCSGLSKRFLVPGIRLGWVVIHDRNNALGEVKQGLRNVSARILGPNSTVQYALPEILQNTQQQFFVNKMMKIAYNAELAYGLLSKIEGLKPVKSKGSMYNMVSIELEKFPEFKNSLEFTQQLIREQSVLVFPSDPCFNYEGFFRIVLTVTEEMIKEACARIDEFCKAHIRT
| Type | Start | End | Length |
| CDS |
44093 |
44386 |
294 |
| CDS |
44454 |
44635 |
182 |
| CDS |
44702 |
45216 |
515 |
| CDS |
45387 |
45465 |
79 |
| CDS |
45527 |
45674 |
148 |
| intron |
44387 |
44453 |
67 |
| intron |
44636 |
44701 |
66 |
| intron |
45217 |
45386 |
170 |
| intron |
45466 |
45526 |
61 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_310789 |
AGAP000327-PA [Anopheles gambiae str. PEST] gb|EAA06243.4| AGAP000327-PA [Anopheles gambiae str. PEST] |
1e-118 |
| InterPro |
IPR015424 |
Pyridoxal phosphate-dependent transferase, major domain |
|
| InterPro |
IPR004839 |
Aminotransferase, class I/classII |
|
| InterPro |
IPR001176 |
1-aminocyclopropane-1-carboxylate synthase |
|
| InterPro |
IPR021178 |
Tyrosine transaminase |
|
| InterPro |
IPR004838 |
Aminotransferases, class-I, pyridoxal-phosphate-binding site |
|
| InterPro |
IPR005957 |
Tyrosine aminotransferase |
|
| InterPro |
IPR005958 |
Tyrosine/nicotianamine aminotransferase |
|
| InterPro |
IPR015421 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
|
| InterPro |
IPR015422 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 2 |
|
| Gene Ontology(BP) |
GO:0042218 |
1-aminocyclopropane-1-carboxylate biosynthetic process |
|
| Gene Ontology(BP) |
GO:0009072 |
aromatic amino acid family metabolic process |
|
| Gene Ontology(BP) |
GO:0009058 |
biosynthetic process |
|
| Gene Ontology(BP) |
GO:0006520 |
cellular amino acid metabolic process |
|
| Gene Ontology(MF) |
GO:0004838 |
L-tyrosine:2-oxoglutarate aminotransferase activity |
|
| Gene Ontology(MF) |
GO:0008483 |
transaminase activity |
|
| Gene Ontology(MF) |
GO:0016740 |
transferase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Gene Ontology(MF) |
GO:0016847 |
1-aminocyclopropane-1-carboxylate synthase activity |
|
| Gene Ontology(MF) |
GO:0030170 |
pyridoxal phosphate binding |
|
| Pfam |
PF01212.16 |
Beta-eliminating lyase |
2.2e-06 |
| Pfam |
PF00155.16 |
Aminotransferase class I and II |
1.5e-58 |
| Pfam |
PF01041.12 |
DegT/DnrJ/EryC1/StrS aminotransferase family |
0.0002 |
| Pfam |
PF01053.15 |
Cys/Met metabolism PLP-dependent enzyme |
1.5e-07 |
| Pfam |
PF00266.14 |
Aminotransferase class-V |
0.0016 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.01865 |