MidgeBase gene description page [Pn.15670]
Outline
| Gene ID | Pn.15670 |
| Type | Protein coding gene |
| Scaffold | PnScaf32229 |
| Start | 9585 |
| End | 16598 |
| Direction | + |
Sequence
Transcript: 732 (bp)
ATGCCAGGCGCATCAAATCTCGGAGGGCCGAAACGCTTCGAGCATGTAATCATTTTTTGGCTTCAATGTGAACAAGTAACGCTGAATGAGCGATTGAATCGTCGAGTTGACTCAATGGTGAAGGATGGACTGCTTGAAGAGATAAGGGCATTTTACGATGAGAATGTGGCAAACCGCGATGTTGACTATGAGGAGGGAATGTTGCAAACGATCGGTTTCAAGGAATTTATTCCGTACCTAGAAAAGTACGATAAAAGTCACGATACTTTAATAAACAAATTCGTGGAAGAACCGTCTGCGACGACGGAACCCGAAGGCTATACCATGCTGTTGAGCTGTTTAGAGGAGCTTAAATTAGTGACACAAAGGTACTCAAAGAGACAATTGAAATGGGTCAAAAATAGATTCCTCGGCAGTGAGCGGCGCGAGGTACCCAAAGTTTATCCACTCGACACCACCGACGTTAGCAAATGGACCGAGAGAGTCTACAAACCGGCTGAAGAAATGATCATGTCCTACGTAAACGAGACGGAAATCAAGCTGAAGCCGCTTGAAAAGTTAAAGAGGCTTGGGGATGGTCTCAACGATGAGACTTCACACTTTTGTGATACATGCAATCGAACTTTCATCGGTGAATTCCAATGGCAGCTTCATCTCAAGTCAAACAAACACAAACGTCATTGCAGTGCTGCAAAGAAAAGGTCTATAAATAAGAACGAGCCGAAGGAGAGT
Protein: 244 (aa)
MPGASNLGGPKRFEHVIIFWLQCEQVTLNERLNRRVDSMVKDGLLEEIRAFYDENVANRDVDYEEGMLQTIGFKEFIPYLEKYDKSHDTLINKFVEEPSATTEPEGYTMLLSCLEELKLVTQRYSKRQLKWVKNRFLGSERREVPKVYPLDTTDVSKWTERVYKPAEEMIMSYVNETEIKLKPLEKLKRLGDGLNDETSHFCDTCNRTFIGEFQWQLHLKSNKHKRHCSAAKKRSINKNEPKES
| Type | Start | End | Length |
| CDS |
9585 |
9591 |
7 |
| CDS |
9836 |
9903 |
68 |
| CDS |
15427 |
15527 |
101 |
| CDS |
16040 |
16595 |
556 |
| intron |
9592 |
9835 |
244 |
| intron |
9904 |
15426 |
5523 |
| intron |
15528 |
16039 |
512 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001659786 |
tRNA delta(2)-isopentenylpyrophosphate transferase [Aedes aegypti] gb|EAT39000.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Aedes aegypti] |
6e-69 |
| InterPro |
IPR003604 |
Zinc finger, U1-type |
|
| InterPro |
IPR007087 |
Zinc finger, C2H2 |
|
| InterPro |
IPR022755 |
Zinc finger, double-stranded RNA binding |
|
| InterPro |
IPR002627 |
tRNA isopentenyltransferase |
|
| Gene Ontology(BP) |
GO:0008033 |
tRNA processing |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Pfam |
PF12874.2 |
Zinc-finger of C2H2 type |
2.3e-06 |
| Pfam |
PF12171.3 |
Zinc-finger double-stranded RNA-binding |
2.6e-08 |
| Pfam |
PF01715.12 |
IPP transferase |
1.8e-17 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| S. invicta |
SI2.2.0_03198 |
| C. quinquefasciatus |
CPIJ018857 |
| A. gambiae |
AGAP000639 |
| N. vitripennis |
NV16690-PA |
| P. humanus |
PHUM566030-PA |
| A. aegypti |
AAEL009163 |
| B. mori |
BGIBMGA012005-TA |
| M. musculus |
ENSMUSG00000028653 |
| D. plexippus |
DPOGS212326PA |
| D. melanogaster |
FBgn0043799 |
| H. sapiens |
ENSP00000439596 |
| H. sapiens |
ENSP00000321810 |
| H. melpomene |
HMEL011462-PA |
| H. sapiens |
ENSP00000388333 |
| H. melpomene |
HMEL013372-PA |
| H. sapiens |
ENSP00000046894 |
| A. aegypti |
AAEL009164 |
| D. plexippus |
DPOGS212324PA |
| H. sapiens |
ENSP00000361905 |
| P. vanderplanki |
Pv.01872 |
| A. mellifera |
GB10295-PA |
| A. mellifera |
GB16433-PA |
| T. castaneum |
TC000060 |
| P. vanderplanki |
Pv.01874 |
| C. quinquefasciatus |
CPIJ003749 |
| P. humanus |
PHUM566140-PA |
| H. sapiens |
ENSP00000361912 |
| S. invicta |
SI2.2.0_12955 |