MidgeBase gene description page [Pn.15653]
Outline
| Gene ID | Pn.15653 |
| Type | Protein coding gene |
| Scaffold | PnScaf32214 |
| Start | 11134 |
| End | 13903 |
| Direction | + |
Sequence
Transcript: 1125 (bp)
ATGACACAATATTTGCCAGCAAATTTGCTTGCTTTATTTGCGGCAAGAGAGCCGATTCCATTTTTACCACCGCCAGACAAACTTCCTCATGAGAAAAAAACGCGTGGCTACTCAGGAGTTGGTGCCTTCCTAGCCGAGTTTGAGGATCCAAAAGATACGCCGCCACCGACCAGAGTCGAAACAAAGGAGGAACGTCTCGAAAGAAGGCGAAGAGAAAAGGCGGAGCAGGTCACATACAAATTGGAACGAGAAATTGCATGTTGGGATCCAAATGCAATTGAAACCACCACAGAAGATCCCTTTAAAACTTTGTTTGTCGCACGTATTAACTATGATACTTCGGAGTCAAAATTGAGGAGAGAGTTTGAGGTATATGGGCCGATTAAGAAGATTATAATGATTCAGGACCAGGATTCAGGAAAACCGAGGGGTTATGCATTTATTGAATATGAACATGAAAGGGACATGCATTCTGCTTACAAACATGCCGACGGTAAAAAAATTGATGGTAGGAGGGTGTTGGTTGACGTCGAGCGAGCAAGAACGGTAAAAGGTTGGTTACCTCGCAGACTCGGCGGTGGTCTTGGTGGCACGAGACGTGGAGGTGCAGAGGTAAATATAAAACATAGCGGAAGAGAGGACAATGTTCGCGAAAAGGAACGATATCGACTCGAGAGGGAAAGAGAGGATCGGCGAGTGGATGAAAGACGTTTCGAAAGAAGACGATCGCGCTCTCGTGAAAAGAGTCGCGAGAGAAGACGCTCTCGATCAAAAGAACGTAGAAGGCATAGATCACGCGAGGAGGACTACGATAGACACGAAAGGAGAGACAGATCACGCGACAGAAAACGACGCAGATCACGTTCTAGAGATCGCGATCGTGCTGAGCGTAAACGCGACAAACGAGATCGTTCAAAGTCACGCGAAAAAAGACGAGACAAGGAAAAGAAGGAACGCAAACCAGAGTTTGATATCAAAATCAAAGAGGAGCCTATTGATGATTATCCCGATTACACTCAGCACGATTATGCGCAGTACGCAAATCAAGTTAAGTATGAATCTGGCGACGAGGAAAAGTATAGACCAAATGAGCAGGATAATGGATACGGCTATCGTCAAGATTAC
Protein: 375 (aa)
MTQYLPANLLALFAAREPIPFLPPPDKLPHEKKTRGYSGVGAFLAEFEDPKDTPPPTRVETKEERLERRRREKAEQVTYKLEREIACWDPNAIETTTEDPFKTLFVARINYDTSESKLRREFEVYGPIKKIIMIQDQDSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERARTVKGWLPRRLGGGLGGTRRGGAEVNIKHSGREDNVREKERYRLEREREDRRVDERRFERRRSRSREKSRERRRSRSKERRRHRSREEDYDRHERRDRSRDRKRRRSRSRDRDRAERKRDKRDRSKSREKRRDKEKKERKPEFDIKIKEEPIDDYPDYTQHDYAQYANQVKYESGDEEKYRPNEQDNGYGYRQDY
| Type | Start | End | Length |
| CDS |
11134 |
11277 |
144 |
| CDS |
11338 |
11520 |
183 |
| CDS |
11582 |
11726 |
145 |
| CDS |
12844 |
13080 |
237 |
| CDS |
13158 |
13323 |
166 |
| CDS |
13400 |
13524 |
125 |
| CDS |
13776 |
13900 |
125 |
| intron |
11278 |
11337 |
60 |
| intron |
11521 |
11581 |
61 |
| intron |
11727 |
12843 |
1117 |
| intron |
13081 |
13157 |
77 |
| intron |
13324 |
13399 |
76 |
| intron |
13525 |
13775 |
251 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001947021 |
PREDICTED: u1 small nuclear ribonucleoprotein 70 kDa-like [Acyrthosiphon pisum] |
1e-90 |
| InterPro |
IPR022023 |
U1 small nuclear ribonucleoprotein of 70kDa N-terminal |
|
| InterPro |
IPR000504 |
RNA recognition motif domain |
|
| InterPro |
IPR012677 |
Nucleotide-binding, alpha-beta plait |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Pfam |
PF00076.17 |
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
2e-18 |
| Pfam |
PF12220.3 |
U1 small nuclear ribonucleoprotein of 70kDa MW N terminal |
6.7e-31 |
| Pfam |
PF13893.1 |
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
3.1e-10 |
| Pfam |
PF05279.6 |
Aspartyl beta-hydroxylase N-terminal region |
3.9 |
| Pfam |
PF10243.4 |
Microtubule-binding protein MIP-T3 |
0.77 |
| Pfam |
PF14259.1 |
RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) |
2.1e-15 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. gambiae |
AGAP006755 |
| H. sapiens |
ENSP00000444479 |
| H. melpomene |
HMEL022574-PA |
| N. vitripennis |
NV13254-PA |
| H. sapiens |
ENSP00000385077 |
| A. mellifera |
GB15137-PA |
| P. humanus |
PHUM022320-PA |
| H. sapiens |
ENSP00000221448 |
| P. vanderplanki |
Pv.08554 |
| A. aegypti |
AAEL011340 |
| S. invicta |
SI2.2.0_14798 |
| B. mori |
BGIBMGA011988-TA |
| T. castaneum |
TC002933 |
| D. melanogaster |
FBgn0016978 |
| A. aegypti |
AAEL015585 |
| M. musculus |
ENSMUSG00000063511 |
| D. plexippus |
DPOGS206206PA |