MidgeBase gene description page [Pn.15607]
Outline
| Gene ID | Pn.15607 |
| Type | Protein coding gene |
| Scaffold | PnScaf31954 |
| Start | 12757 |
| End | 14235 |
| Direction | + |
Sequence
Transcript: 1020 (bp)
ATGAAGCAAACGATAAGAACACTGAACCAAGAGATGACAAATCGCGGCAATCGTTCGGTGGATACACAAGTAGAAGTCACTGAGAGCAGCCCGCTCAACAAACGCCCGAACACGACAATTACGGCCACGGAAACTTTCGCCATGGACACGGAGACGAAGCGAGTCCTCACCAAAATTGTCATCGACCTCGTCCTGCTGGGCAGCGTTGGACTTCCCGTGCTGTGCTACTTCCTCTTTGGAGTTCCTTACGAGCGCGGCTTCCACTGCGATGACGAGTCGCTGATGTATCCGTTCAAGGAGAGCACGGTGACGCACGAAGTGCTTTACTCAGTAGGCTTTGGTGTTCCCATCATTTGCATTGTGGTCATCGAGTTCCTGCGATGGAAGTGGGGCATGGAGACCGAAAAGGAGTTGAAAATGTTCGGCCGGCCGATTCCCGTGTGGATCCAGCACTGCTACAAATTCATCGGCATCCTGCTCTTCGGCGCCGCTTGCAGCCAGCTCACGACGGACATCGCCAAATACACAATTGGCCGCTTGCGTCCGCACTTTATCAGCGTCTGTCAGCCAGTGATGCCGGACGGCACGAACTGCACCAACCCGATCAACTTCAACCGCTACATCATCGACTTCGAGTGCAGCAACGTGGACGCGTCGAAGCGGAAACTGAAGGAGATGCGCCTGAGCTTCCCGAGCGGCCACAGCTCGTTCAGCATGTATACGATGGTCTTTGCAGCTCTCTACATCCACTGCCGCATGGAGTTGAAGGGCTCGAAGCTGCTCAAGCACTTCCTGCAGTTCGTTTTCATCTCGATGGCCTGGTACACGGCGCTCACGCGAGTCTCCAACTACAAGCACCACTGGTCGGACGTGCTCGCCGGCAGCCTCCAAGGTTTGGTCGTGTCCCTGCTGATTGTCTTTGGCGTGTCGGATCTCTTCAAGATTTTGTGGCGCAGTCGAGAGGCCAAGCAGCCGGCAGGATCACGCTACGAACTGAACTCTCAAAACTCTAGAAGCAAT
Protein: 340 (aa)
MKQTIRTLNQEMTNRGNRSVDTQVEVTESSPLNKRPNTTITATETFAMDTETKRVLTKIVIDLVLLGSVGLPVLCYFLFGVPYERGFHCDDESLMYPFKESTVTHEVLYSVGFGVPIICIVVIEFLRWKWGMETEKELKMFGRPIPVWIQHCYKFIGILLFGAACSQLTTDIAKYTIGRLRPHFISVCQPVMPDGTNCTNPINFNRYIIDFECSNVDASKRKLKEMRLSFPSGHSSFSMYTMVFAALYIHCRMELKGSKLLKHFLQFVFISMAWYTALTRVSNYKHHWSDVLAGSLQGLVVSLLIVFGVSDLFKILWRSREAKQPAGSRYELNSQNSRSN
| Type | Start | End | Length |
| CDS |
12757 |
12789 |
33 |
| CDS |
12981 |
13152 |
172 |
| CDS |
13209 |
13360 |
152 |
| CDS |
13515 |
14019 |
505 |
| CDS |
14075 |
14232 |
158 |
| intron |
12790 |
12980 |
191 |
| intron |
13153 |
13208 |
56 |
| intron |
13361 |
13514 |
154 |
| intron |
14020 |
14074 |
55 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001841804 |
phosphatidate phosphatase [Culex quinquefasciatus] gb|EDS25757.1| phosphatidate phosphatase [Culex quinquefasciatus] |
2e-90 |
| InterPro |
IPR016118 |
Phosphatidic acid phosphatase/chloroperoxidase, N-terminal |
|
| InterPro |
IPR000326 |
Phosphatidic acid phosphatase type 2/haloperoxidase |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF04172.11 |
LrgB-like family |
0.0082 |
| Pfam |
PF01569.16 |
PAP2 superfamily |
1.3e-22 |
| Pfam |
PF11168.3 |
Protein of unknown function (DUF2955) |
0.054 |
| Pfam |
PF09329.6 |
Primase zinc finger |
0.061 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. mellifera |
GB17815-PA |
| H. melpomene |
HMEL006424-PA |
| D. plexippus |
DPOGS214346PA |
| T. castaneum |
TC015891 |
| H. sapiens |
ENSP00000360296 |
| B. mori |
BGIBMGA003968-TA |
| A. gambiae |
AGAP012445 |
| C. quinquefasciatus |
CPIJ000134 |
| N. vitripennis |
NV16393-PA |
| H. sapiens |
ENSP00000302229 |
| M. musculus |
ENSMUSG00000028517 |
| P. humanus |
PHUM389600-PA |
| M. musculus |
ENSMUSG00000021759 |
| D. melanogaster |
FBgn0016078 |
| S. invicta |
SI2.2.0_15318 |
| H. sapiens |
ENSP00000264775 |
| D. plexippus |
DPOGS214348PA |
| A. aegypti |
AAEL007322 |
| P. vanderplanki |
Pv.11510 |
| B. mori |
BGIBMGA003967-TA |