MidgeBase gene description page [Pn.15601]
Outline
| Gene ID | Pn.15601 |
| Type | Protein coding gene |
| Scaffold | PnScaf31921 |
| Start | 449 |
| End | 1791 |
| Direction | + |
Sequence
Transcript: 402 (bp)
ATGTCACTACCGAACTACAAGCAAATCCTCCCGAATCCACATCTAATGACTGCTGGCCATCCGGTTACATTCAATATTTTGAAAGAGCGCCTGAGGCCGTCGGGTTCGGGCCAAGGAATGAGTCGCGACCAGTCGCCTTTCGTCCACTCGCCGCACGGAAATTCGAACTTTACGCCGCAGAAGGCTGGCAAGAGCAGCTCGGCCAGTCTGGAGTCGCGATTTCCGAAACCGCCAAAGGCTCCCGAGAAGCCAGTCATGCCCTACATGCGCTACTCGAAGAAGCAGTGGGAAACTGTCAAAAACTCTAATCCCGAGCTGAAGCTCTGGGAGATTGGCAAGAAAATCGGAATGGTGAGCAGACGGAAGGTGCACCCAGAAAAAAAAATCTATTACACGTGTAAT
Protein: 134 (aa)
MSLPNYKQILPNPHLMTAGHPVTFNILKERLRPSGSGQGMSRDQSPFVHSPHGNSNFTPQKAGKSSSASLESRFPKPPKAPEKPVMPYMRYSKKQWETVKNSNPELKLWEIGKKIGMVSRRKVHPEKKIYYTCN
| Type | Start | End | Length |
| CDS |
449 |
488 |
40 |
| CDS |
992 |
1036 |
45 |
| CDS |
1384 |
1505 |
122 |
| CDS |
1594 |
1788 |
195 |
| intron |
489 |
991 |
503 |
| intron |
1037 |
1383 |
347 |
| intron |
1506 |
1593 |
88 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFX64340 |
hypothetical protein DAPPUDRAFT_305068 [Daphnia pulex] |
4e-27 |
| InterPro |
IPR009071 |
High mobility group, superfamily |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF00505.14 |
HMG (high mobility group) box |
7.5e-07 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ018416 |