MidgeBase gene description page [Pn.15597]
Outline
| Gene ID | Pn.15597 |
| Type | Protein coding gene |
| Scaffold | PnScaf31883 |
| Start | 18057 |
| End | 18611 |
| Direction | - |
Sequence
Transcript: 480 (bp)
ATGACTTTGAGATCACGAGAGAGCAATATTCGTGCATTTGTCAAGTTTACAAACACTTCCGAACGCCTTGTTGAAATACACTGGATTAACTTTATGGGTCACAATATTCACTATTCAAATCTTCAGAAGGACCAATCGTGCGTCGTTAATACATACACTACTCATCCCTTCATTTTCATTTGCCAAAAATCGGGCGAGCGACTGTGTGTGAATAATAACGAGGTCTTTTTGGCGAAACCTTGGTTCAATTTTATAACTGACAGCAACAATGGTCATGTCTCGGTAGAGAGGGAGGAAGCAAAAATTCACATACCGCTTAAGTCTCTTAGAGACATTTGTCTGTGGAAGCTTCTCTTCATGATCAACACCAGAGACGACATTGATGACTTGGAAATTCCGAGGACTCTAAAAAATGATCTGCAGCACTGCTTTTTCCTCTCGACGCGGTATCGTGAGATTGAGTCTGAAAGCTCCAGCGAA
Protein: 160 (aa)
MTLRSRESNIRAFVKFTNTSERLVEIHWINFMGHNIHYSNLQKDQSCVVNTYTTHPFIFICQKSGERLCVNNNEVFLAKPWFNFITDSNNGHVSVEREEAKIHIPLKSLRDICLWKLLFMINTRDDIDDLEIPRTLKNDLQHCFFLSTRYREIESESSSE
| Type | Start | End | Length |
| CDS |
18060 |
18385 |
326 |
| CDS |
18458 |
18611 |
154 |
| intron |
18386 |
18457 |
72 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001652392 |
von Hippel-Lindau disease tumor suppressor, putative [Aedes aegypti] ref|XP_001652394.1| von Hippel-Lindau disease tumor suppressor, putative [Aedes aegypti] gb|EAT47770.1| von Hippel-Lindau disease tumor suppressor, putative [Aedes aegypti] gb|EAT47772.1| von Hippel-Lindau disease tumor suppressor, putative [Aedes aegypti] |
1e-27 |
| InterPro |
IPR002714 |
Tumour suppressor protein, von Hippel-Lindau disease |
|
| InterPro |
IPR024053 |
von Hippel-Lindau disease tumor suppressor, beta domain |
|
| InterPro |
IPR022772 |
von Hippel-Lindau disease tumour suppressor, beta/alpha domain |
|
| Gene Ontology(BP) |
GO:0016567 |
protein ubiquitination |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Pfam |
PF01847.11 |
von Hippel-Lindau disease tumour suppressor protein |
7.3e-08 |
| Pfam |
PF10309.4 |
Protein of unknown function (DUF2414) |
0.093 |
| Pfam |
PF07525.11 |
SOCS box |
0.062 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000256474 |
| N. vitripennis |
NV26039-PA |
| M. musculus |
ENSMUSG00000033933 |
| D. melanogaster |
FBgn0041174 |
| P. humanus |
PHUM227970-PA |
| T. castaneum |
TC009209 |
| A. gambiae |
AGAP002496 |
| A. mellifera |
GB15248-PA |
| A. aegypti |
AAEL001105 |
| S. invicta |
SI2.2.0_11386 |
| H. sapiens |
ENSP00000464258 |
| P. vanderplanki |
Pv.04809 |
| B. mori |
BGIBMGA009155-TA |
| D. plexippus |
DPOGS213348PA |
| C. quinquefasciatus |
CPIJ009992 |