MidgeBase gene description page [Pn.15573]
Outline
| Gene ID | Pn.15573 |
| Type | Protein coding gene |
| Scaffold | PnScaf31732 |
| Start | 297 |
| End | 820 |
| Direction | - |
Sequence
Transcript: 453 (bp)
ATGGATTCAGAACTCAGTGATTTTGTCTCTCCGTCACAAAGCTCACCATCGACTTCAACGACGCCGAGCGGTGGACAGAATAAGAACACCTCCGGATCTGAAAGTGCAACAGTCCTCCTCACCAAACCCCGATTGCAGGAGCTCGTGCGAGAAGTCGACCCGAACGAACAGCTCGACGAGGAGGTCGAAGACTGTCTTCTGCAGATAGCCGACGAGTTCGTGGAAAATGTGATAAACGGGTCGTGTCTCTTAGCAAAGCATCGCATTCAAAATGGACAGCCAAACCGCGAGAACAAGGTTGAGGTGAAGGACGTTCAGCTATTTCTCGAGAGAAATTGGAACTTGTGGATTCCTGGCTTCGGAACGGAGGAGCTCAGACCGTACAAGAGGACGACAGTAACCGAGGCTCACAAACAGCGTCAAGCATTGATAAGAAAGGCACTTAAGAAATAT
Protein: 151 (aa)
MDSELSDFVSPSQSSPSTSTTPSGGQNKNTSGSESATVLLTKPRLQELVREVDPNEQLDEEVEDCLLQIADEFVENVINGSCLLAKHRIQNGQPNRENKVEVKDVQLFLERNWNLWIPGFGTEELRPYKRTTVTEAHKQRQALIRKALKKY
| Type | Start | End | Length |
| CDS |
300 |
638 |
339 |
| CDS |
707 |
820 |
114 |
| intron |
639 |
706 |
68 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_312822 |
AGAP003135-PA [Anopheles gambiae str. PEST] gb|EAA08444.5| AGAP003135-PA [Anopheles gambiae str. PEST] |
3e-43 |
| InterPro |
IPR003228 |
Transcription initiation factor TFIID |
|
| InterPro |
IPR007900 |
Transcription initiation factor TFIID component TAF4 |
|
| InterPro |
IPR009072 |
Histone-fold |
|
| Gene Ontology(BP) |
GO:0006352 |
transcription initiation, DNA-dependent |
|
| Gene Ontology(CC) |
GO:0005669 |
transcription factor TFIID complex |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Pfam |
PF05236.9 |
Transcription initiation factor TFIID component TAF4 family |
6.2e-05 |
| Pfam |
PF03847.8 |
Transcription initiation factor TFIID subunit A |
1.4e-26 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA010172-TA |
| H. sapiens |
ENSP00000263974 |
| P. humanus |
PHUM507150-PA |
| A. gambiae |
AGAP003135 |
| C. quinquefasciatus |
CPIJ011778 |
| A. mellifera |
GB18576-PA |
| D. melanogaster |
FBgn0011290 |
| H. sapiens |
ENSP00000362930 |
| H. melpomene |
HMEL013597-PA |
| P. vanderplanki |
Pv.09591 |
| N. vitripennis |
NV13964-PA |
| S. invicta |
SI2.2.0_01286 |
| A. aegypti |
AAEL008363 |
| D. plexippus |
DPOGS212019PA |
| T. castaneum |
TC007989 |
| M. musculus |
ENSMUSG00000028899 |