MidgeBase gene description page [Pn.15554]
Outline
| Gene ID | Pn.15554 |
| Type | Protein coding gene |
| Scaffold | PnScaf31531 |
| Start | 11604 |
| End | 13811 |
| Direction | + |
Sequence
Transcript: 822 (bp)
ATGGACTCCATTGACAAATTGGACTTGTTCCAATCACTAAAAGATGAATCGGACGACGTGAAATTGCCAAATATTAAAAGTGAAGAGTCCGAAGACCAAGCGAAAACAAGCGAGAACGATGATGATGAAGAAGACGATCACAACAACGGCGACCAAAACAATTTATCAGAGACAGATAACGAAGACTTAAGTTCAGCAATTCCCGGAACGTCTTCAAATATTTTTGACAAAGCATTCAAGAAAAAGATGGATAAGCAAAATCGGAAAGAGGCAGAAGAGGAGGAAAGAGAAAAGATGCTGGTGCTCGTGTCAAACTTCACAGAAGAGCAACTTGATAGATACGAAATGTACCGGAGAGCGGCCTTTCCTAAAGCTCCCGTCAAAAGGCTGATGCAAACAATCACGGGATGCTCAGTATCGCAAAACGTCGTCATCGCTATGAGTGGCATTGCAAAAGTCTTTGTCGGAGAAGTCGTTGAGGAAGCTCTGGATGTGGCCGAAAGTTGGGGAGAAATCTCGAGTGGCTGCGACGTTTTGAAGGATACCCATCATGGATGCAAAATCGAAAACTCGCAATGCATTTGCGCATATGGATGCAAAAGTGAATATCGATACACAACCAAGAAAGAGTGCACGGATTCATTAAAGGGCAGAGCTAGCGACGTTTGCAGTCACGCACCTTGTCTGAATGGAGGAAACTGTATCCAAATATCGCTTAATCCAGGATTCAAGTGTAAATGCGAAGGAACTCGCTTCTATGGAGCCCGATGCCAAAGACCTTGCCCAAAAGATGGACATATTCCTTACGAATGCGTGGAAATT
Protein: 274 (aa)
MDSIDKLDLFQSLKDESDDVKLPNIKSEESEDQAKTSENDDDEEDDHNNGDQNNLSETDNEDLSSAIPGTSSNIFDKAFKKKMDKQNRKEAEEEEREKMLVLVSNFTEEQLDRYEMYRRAAFPKAPVKRLMQTITGCSVSQNVVIAMSGIAKVFVGEVVEEALDVAESWGEISSGCDVLKDTHHGCKIENSQCICAYGCKSEYRYTTKKECTDSLKGRASDVCSHAPCLNGGNCIQISLNPGFKCKCEGTRFYGARCQRPCPKDGHIPYECVEI
| Type | Start | End | Length |
| CDS |
11604 |
11866 |
263 |
| CDS |
11927 |
12069 |
143 |
| CDS |
12145 |
12252 |
108 |
| CDS |
13030 |
13163 |
134 |
| CDS |
13556 |
13652 |
97 |
| CDS |
13732 |
13808 |
77 |
| intron |
11867 |
11926 |
60 |
| intron |
12070 |
12144 |
75 |
| intron |
12253 |
13029 |
777 |
| intron |
13164 |
13555 |
392 |
| intron |
13653 |
13731 |
79 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001847221 |
transcription initiation factor TFIID subunit 11 [Culex quinquefasciatus] gb|EDS45850.1| transcription initiation factor TFIID subunit 11 [Culex quinquefasciatus] |
8e-37 |
| InterPro |
IPR006809 |
TAFII28-like protein |
|
| InterPro |
IPR009072 |
Histone-fold |
|
| InterPro |
IPR000742 |
Epidermal growth factor-like domain |
|
| Gene Ontology(BP) |
GO:0006367 |
transcription initiation from RNA polymerase II promoter |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF00125.19 |
Core histone H2A/H2B/H3/H4 |
0.069 |
| Pfam |
PF11075.3 |
Protein of unknown function VcgC/VcgE (DUF2780) |
0.14 |
| Pfam |
PF00808.18 |
Histone-like transcription factor (CBF/NF-Y) and archaeal histone |
2.1e-05 |
| Pfam |
PF02724.9 |
CDC45-like protein |
4.2 |
| Pfam |
PF13203.1 |
Putative metallopeptidase domain |
3.5 |
| Pfam |
PF00008.22 |
EGF-like domain |
0.00023 |
| Pfam |
PF13917.1 |
Zinc knuckle |
0.068 |
| Pfam |
PF03344.10 |
Daxx Family |
7.3e-05 |
| Pfam |
PF04719.9 |
hTAFII28-like protein conserved region |
1.4e-30 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC003938 |
| A. aegypti |
AAEL010019 |
| A. gambiae |
AGAP005522 |
| P. vanderplanki |
Pv.04134 |
| A. aegypti |
AAEL014850 |
| H. melpomene |
HMEL002502-PA |
| D. plexippus |
DPOGS200432PA |
| B. mori |
BGIBMGA008893-TA |
| H. sapiens |
ENSP00000354633 |
| S. invicta |
SI2.2.0_05994 |
| C. quinquefasciatus |
CPIJ005672 |
| D. melanogaster |
FBgn0011291 |
| M. musculus |
ENSMUSG00000024218 |
| A. mellifera |
GB12305-PA |
| P. humanus |
PHUM581970-PA |