MidgeBase gene description page [Pn.15520]
Outline
| Gene ID | Pn.15520 |
| Type | Protein coding gene |
| Scaffold | PnScaf31156 |
| Start | 858 |
| End | 2298 |
| Direction | + |
Sequence
Transcript: 1095 (bp)
ATGGAAGGGCTAAAAGTGATTTTGCTAATTTTTGCTGGTCTTCTGGTTGGCCAGTCGAGTGCACAACAGGCTACGTGTCAGTTTGGCTTCCTGACCATTGGAGACCTAGACTTGTATACGTGCAACCTTCGTATTTTGGACACAGCCACAGAGGAGATCACTGAAATCGAAGGCGAACACTTGGACGGCTTCACTGACGCCGACGTTCGGGATATTTTTCTCATCGGCGGAAGCACAAAAACCTTCCCACGAGTCATTTGCTCCCGCTTTTCACAAACCACCCACATTTTCTTCAGTTTTGCCCGAATGTCGCAACTTCTTGAGGGCTCGTTCAGCCAGTGCGAAAGCATTCAAGTCATCAGCCTTTTCGGGAACGAAATAACATCGCTTCCGACCAACATCCTCGCCAACAATCGCCAAATTGTTCAGTTTACCGTCACCAGCAACAACCTTACGCATATCGATGAGCGAACCTTTGCCGATGTTCCCTCGCTTCGCATTCTCGCCATCGGCAGCAATCCGCTTGCCGAAGTCCCCGAGAATTTGTTTCGAAATCTCCACAACCTGACGGACCTGGGCCTCACCTCACTCGGCCTCACCGCCATCAACCCTCAGTGGTTCGCCAACAACCCGAACCTCATGAACCTGCAAATCGACAACAACCGGATCACGTCGGTGCAGGCGAGTGACTTCGTGAACCTCGGCTCGCTCATGTGGCTGGCAATCAGCAACAACCCGCTCGGAAGTTTCCCGCGCGAAGCCTTTCTGGGTCTCGAAAATCTTCGCATCCTCAACGTGGGAAACATCGGGCTTACTGCGCTCACGCCCGGCATGTTCGAGGGCTTTTCGCAGCTTCAAGCGATCGACTTTCACTGGAATAACATCGGGGTGATCGAGGAGGGAACCTTCCGGGGACTGACGGGTCTCCAGTGGCTTTTCCTGGACGGCGTGCAGATCCGCGAACTCCGGCCGAATTCCTTCGTCGGTCTGCCGAATCTGAGCTTCATTAACCTGGGCATGAACAACATCGAAGAGCTGCCGGTCGGAGTTTTTGCGCCATGTGAGCAGCTTGACCTTCATCGATCTTGGACAGAA
Protein: 365 (aa)
MEGLKVILLIFAGLLVGQSSAQQATCQFGFLTIGDLDLYTCNLRILDTATEEITEIEGEHLDGFTDADVRDIFLIGGSTKTFPRVICSRFSQTTHIFFSFARMSQLLEGSFSQCESIQVISLFGNEITSLPTNILANNRQIVQFTVTSNNLTHIDERTFADVPSLRILAIGSNPLAEVPENLFRNLHNLTDLGLTSLGLTAINPQWFANNPNLMNLQIDNNRITSVQASDFVNLGSLMWLAISNNPLGSFPREAFLGLENLRILNVGNIGLTALTPGMFEGFSQLQAIDFHWNNIGVIEEGTFRGLTGLQWLFLDGVQIRELRPNSFVGLPNLSFINLGMNNIEELPVGVFAPCEQLDLHRSWTE
| Type | Start | End | Length |
| CDS |
858 |
1041 |
184 |
| CDS |
1311 |
2184 |
874 |
| CDS |
2259 |
2295 |
37 |
| intron |
1042 |
1310 |
269 |
| intron |
2185 |
2258 |
74 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002611131 |
hypothetical protein BRAFLDRAFT_88470 [Branchiostoma floridae] gb|EEN67141.1| hypothetical protein BRAFLDRAFT_88470 [Branchiostoma floridae] |
9e-27 |
| InterPro |
IPR003591 |
Leucine-rich repeat, typical subtype |
|
| Pfam |
PF13855.1 |
Leucine rich repeat |
1.3e-45 |
| Pfam |
PF12799.2 |
Leucine Rich repeats (2 copies) |
2.5e-19 |
| Pfam |
PF13504.1 |
Leucine rich repeat |
7.1e-06 |
| Pfam |
PF07604.6 |
Protein of unknown function (DUF1567) |
0.1 |
| Pfam |
PF00560.28 |
Leucine Rich Repeat |
9.4e-12 |
| Pfam |
PF13306.1 |
Leucine rich repeats (6 copies) |
2.8e-25 |
| Pfam |
PF13516.1 |
Leucine Rich repeat |
0.0013 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes