MidgeBase gene description page [Pn.15482]
Outline
| Gene ID | Pn.15482 |
| Type | Protein coding gene |
| Scaffold | PnScaf30856 |
| Start | 11783 |
| End | 13633 |
| Direction | - |
Sequence
Transcript: 1632 (bp)
ATGTCGTTGACAACAGTGATCTTCATATACGCAACCATCGTTGTGTTATTACATCAGACTCTTGCAATAAATTTTACATGCCTAAATGGCGATATTGTGGGCGCAAATGAAATTTGTAATGGAGTTGCCAACTGTATAGACTCATCCGATGAACGAAGTGAATTGTGCTCTACTACAATTTGTCAACCACAGCAATTCAAATGTCATTATGGCGGATGTGTGGACCGAGAAAAGTTTTGCAATAAAATTAACGATTGCCTTGACGCTTCAGACGAATTTAATTGCGGCAGATCTAATAAAAGTTGCGATTCAAAGGAATTTTACTGCTCGAGCAGTGAAAAATGCATAGATGCATCGCTAATTTGTAACAATCAACGAGATTGTCCCAATGGTGAGGACGAGAGCGTATGTCAATCACAATTATGTCCTGAAACGAGTTTTCGATGTAGTCACGGTAGATGCATTGATCAAGAGCTGCTCTGCAACAACTTCAACGACTGTATTAACGGAGATGACGAATCTGACGTACTGTGTAGCAGGCCGGCAAACTGCACCGACTGCAAGCAAGAGGTTAACTGTCCTTCTATAAAATCGCACCGACTGAACACACTTTGCACATTGGAAAATGCAGTCGTTTCTTGCTTCAGAAATGTGCAGCCTGGAACGGTTGTCGAATACTCTTGTAGAGAGTATTATGTGCCGATTAACGACATTCATAAGTACAACTATCGAGCAAAGTGCCAAAGGAACGGACAATGGTCATCGGAAGTTTTAAAATGTACGCCCAAATGTGGCTACTTGCAAAATTATGTTGCTCTCATAGTCAATGGATATTCGATGGAAACCTTATTTCCGTGGCATGCAACAGTTTTCATAAAGCGTGAAAGGGGATTTGAGTTTGCTTGTGGTGCATCACTGATTTCCGAATCAGTTATTGTGTCAGCATCGCATTGTTTCAATGGATTAAACGAATCAAATGTAAAAATTGCAATTGGTAAACGATACAGCAGCATAGACATACGTCCAGACGAAGTTAATGCGCAACTTGTCTCCGTTTTACGAATTTATCGACACCCGTTATATTTGGATAGAGTTGGAAATTATGGGCAAGATTTGGCACTTGTTGAATTAAGTGAAATCATTGAACTCAACGATGATATTCATCCTATCTGTATCGATTGGCAGAACAACGAGAGCTTGATCGAGAATCAATTAGGAATTGTTGTTGGCATGGGAGTAACCGAAAACGAGACATTCAGTGATGCAATACGAGTGGCAAAGCTTCAAGTCAAACCGACTCGAGATTGCATAAATAAGCAGCCAAAGGACTTTCAAAAATACATCACTTTTACAACATTTTGTGCCGGCACCGAAAACGGCACTTCTGCCTGTAACGGTGATTCTGGTGGCGGATTTCAAGTGTTATCGAGAGACTTGAAAACATGGACGATTCAGGGGATTGTTAGTTTAAGTCCTCGAAAGAGTTCTACTTTCTTTTGCGATCCATCCAAATACACAATATTTACCAAAATTGAAGTATATGTCAAATGGATTAAGTCGATTCTAGATGAGCTTGAAGAAAGACGAATGGCAAAGGCACTCATCGAGGACGAGAGTCTTGATCTTTTAAAT
Protein: 544 (aa)
MSLTTVIFIYATIVVLLHQTLAINFTCLNGDIVGANEICNGVANCIDSSDERSELCSTTICQPQQFKCHYGGCVDREKFCNKINDCLDASDEFNCGRSNKSCDSKEFYCSSSEKCIDASLICNNQRDCPNGEDESVCQSQLCPETSFRCSHGRCIDQELLCNNFNDCINGDDESDVLCSRPANCTDCKQEVNCPSIKSHRLNTLCTLENAVVSCFRNVQPGTVVEYSCREYYVPINDIHKYNYRAKCQRNGQWSSEVLKCTPKCGYLQNYVALIVNGYSMETLFPWHATVFIKRERGFEFACGASLISESVIVSASHCFNGLNESNVKIAIGKRYSSIDIRPDEVNAQLVSVLRIYRHPLYLDRVGNYGQDLALVELSEIIELNDDIHPICIDWQNNESLIENQLGIVVGMGVTENETFSDAIRVAKLQVKPTRDCINKQPKDFQKYITFTTFCAGTENGTSACNGDSGGGFQVLSRDLKTWTIQGIVSLSPRKSSTFFCDPSKYTIFTKIEVYVKWIKSILDELEERRMAKALIEDESLDLLN
| Type | Start | End | Length |
| CDS |
11786 |
12021 |
236 |
| CDS |
12095 |
12112 |
18 |
| CDS |
12195 |
13264 |
1070 |
| CDS |
13326 |
13633 |
308 |
| intron |
12022 |
12094 |
73 |
| intron |
12113 |
12194 |
82 |
| intron |
13265 |
13325 |
61 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EGI57912 |
Low-density lipoprotein receptor [Acromyrmex echinatior] |
5e-82 |
| InterPro |
IPR002172 |
Low-density lipoprotein (LDL) receptor class A repeat |
|
| InterPro |
IPR023415 |
Low-density lipoprotein (LDL) receptor class A, conserved site |
|
| InterPro |
IPR016060 |
Complement control module |
|
| InterPro |
IPR001879 |
GPCR, family 2, extracellular hormone receptor domain |
|
| InterPro |
IPR009003 |
Peptidase cysteine/serine, trypsin-like |
|
| InterPro |
IPR000436 |
Sushi/SCR/CCP |
|
| InterPro |
IPR001254 |
Peptidase S1/S6, chymotrypsin/Hap |
|
| InterPro |
IPR018114 |
Peptidase S1/S6, chymotrypsin/Hap, active site |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0004252 |
serine-type endopeptidase activity |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Gene Ontology(MF) |
GO:0004930 |
G-protein coupled receptor activity |
|
| Pfam |
PF00089.21 |
Trypsin |
1.4e-37 |
| Pfam |
PF00057.13 |
Low-density lipoprotein receptor domain class A |
6.3e-24 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.17095 |
| H. melpomene |
HMEL013253-PA |
| D. plexippus |
DPOGS215001PA |
| A. mellifera |
GB15317-PA |
| T. castaneum |
TC004535 |
| H. melpomene |
HMEL010958-PA |
| T. castaneum |
TC004535-GA |
| D. plexippus |
DPOGS204619PA |
| P. vanderplanki |
Pv.10624 |
| A. aegypti |
AAEL002767 |
| A. gambiae |
AGAP001798 |
| C. quinquefasciatus |
CPIJ013362 |
| D. plexippus |
DPOGS201589PA |
| B. mori |
BGIBMGA012217-TA |
| N. vitripennis |
NV18254-PA |
| T. castaneum |
TC004523 |
| S. invicta |
SI2.2.0_02615 |
| D. melanogaster |
FBgn0051217 |