MidgeBase gene description page [Pn.15445]
Outline
| Gene ID | Pn.15445 |
| Type | Protein coding gene |
| Scaffold | PnScaf30392 |
| Start | 8993 |
| End | 10882 |
| Direction | + |
Sequence
Transcript: 1563 (bp)
ATGGCGCTGTATGTTTTGTACGAACATGCATCTGGATATGCGTTGTTCAAAGTGAAGGAGTTTGAAGATGTTGGTATGCTCATACCTCAAGTCGAAGAATCACATGCCGATGTTTCGAGATTCAAATCAATTGTAAGTTTGGAAGGATTTTCGCCATTCAAGACAGCAGTATCGGCTTTGGAAAATGTCAATGCGGTCTCGGAGGGTATCGTTTCAGAGGATTTAAGCGCTTTTCTCGACAACACACTTCCAAAAGTGTCAAAGAAACAAAAATTTACGCTAGGTGTGTCGGATGCAAAACTTGGAGCTGCAGTTGCAGAAGCCCTCAAAGTTCAATGCTCGCACATTGGTGCCGTTCCAGAAGTTTTGAGAGGCATTCGTATGCACTTCCCGAATTTGGTAAAAGGGTTCACACCAAAAAGCGCTGCAATCGCTCAATTGGGTCTCGGTCACAGCTACTCCCGAGCTAAAGTCAAGTTCAACGTCAACAGAGCTGACAACATGATCATACAGTCGATTGCCCTTCTCGATCAGTTGGATAAAGATATCAACACATTTGCTATGCGTATTCGCGAGTGGTATTCATATCACTTCCCAGAATTGGTCAAAATTGTTCCTGACAACTACATGTATGCTAAGGTTGCTCATCATATCAAAGATCGACGAAATCTATCTGATGAAAGCGTCGCCGAACTAGAGGAAATTCTCATGGATTCGGGCAAGGCATCTGCAATTGTTGAAGCTTCGAAAATGTCTATGGGCATGGATATATCGGAGATTGACCTCATGAACATCGAAATGTTTGCAAAACGCGTTGTTAATCTCTCCGAGTATCGAAAACAGCTAGCGGAATATTTGCATTCGAAAATGAATCAAGTTGCACCGAATTTGCAGTCACTCATTGGTGATCAAGTCGGAGCACGTCTTATATCTAAAGCAGGCAGTCTTACCAACTTGGCAAAGTATCCAGCATCGACTGTTCAAATCTTGGGAGCAGAAAAAGCTCTATTTCGTGCATTGAAAACGCGTAGCAACACTCCAAAATACGGTTTGCTCTTTCACTCCTCATTCATTGCTAAAGCTGGATCCAAGAACAAAGGTCGAATTTCAAGGTTCTTGGCCAATAAATGTTCTGTGGCATCAAGAATTGATTGCTTCACAGAAACACCGTCTCATGTTTTTGGAGACTATTTGAAGCAACAAGTTGAAGATCGTTTGAAGTTTTATGAATCAGGAGATGCACCAAGAAAAAATATTGATGTTATGAAAGAGGCAATTCAGGTTGCAGGCATCCAGGCAGAAGAAAGTGCAAAGAAAAAGAAGAAAAAGAACAAGAAACGCAAGCTAGACGAAGAGAATGGCAACGGAACTGTGGAAGAGACTTCAATGGTCGTTTCTGAAGTGGTTGAAGAACAGACTCCCAAGAAGAAAAAGAAAAAATCAAAACAAAATGATAATGAAGACGCAAATGGATCGCAGAATGATTCACAGCTTGAGACCAATGGTGAAAGCAAAAAGAAGAAGAAAAAGAAGAATCGCCAAGAAGTGGGCATTGATGAAGAT
Protein: 521 (aa)
MALYVLYEHASGYALFKVKEFEDVGMLIPQVEESHADVSRFKSIVSLEGFSPFKTAVSALENVNAVSEGIVSEDLSAFLDNTLPKVSKKQKFTLGVSDAKLGAAVAEALKVQCSHIGAVPEVLRGIRMHFPNLVKGFTPKSAAIAQLGLGHSYSRAKVKFNVNRADNMIIQSIALLDQLDKDINTFAMRIREWYSYHFPELVKIVPDNYMYAKVAHHIKDRRNLSDESVAELEEILMDSGKASAIVEASKMSMGMDISEIDLMNIEMFAKRVVNLSEYRKQLAEYLHSKMNQVAPNLQSLIGDQVGARLISKAGSLTNLAKYPASTVQILGAEKALFRALKTRSNTPKYGLLFHSSFIAKAGSKNKGRISRFLANKCSVASRIDCFTETPSHVFGDYLKQQVEDRLKFYESGDAPRKNIDVMKEAIQVAGIQAEESAKKKKKKNKKRKLDEENGNGTVEETSMVVSEVVEEQTPKKKKKKSKQNDNEDANGSQNDSQLETNGESKKKKKKKNRQEVGIDED
| Type | Start | End | Length |
| CDS |
8993 |
8995 |
3 |
| CDS |
9112 |
10061 |
950 |
| CDS |
10123 |
10331 |
209 |
| CDS |
10399 |
10517 |
119 |
| CDS |
10598 |
10879 |
282 |
| intron |
8996 |
9111 |
116 |
| intron |
10062 |
10122 |
61 |
| intron |
10332 |
10398 |
67 |
| intron |
10518 |
10597 |
80 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_320984 |
AGAP002063-PA [Anopheles gambiae str. PEST] gb|EAA01114.5| AGAP002063-PA [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR002687 |
Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain |
|
| InterPro |
IPR012974 |
NOP5, N-terminal |
|
| InterPro |
IPR012976 |
NOSIC |
|
| Pfam |
PF01798.13 |
Putative snoRNA binding domain |
2e-60 |
| Pfam |
PF08060.8 |
NOSIC (NUC001) domain |
3.5e-26 |
| Pfam |
PF08156.8 |
NOP5NT (NUC127) domain |
1.8e-22 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. melanogaster |
FBgn0038964 |
| M. musculus |
ENSMUSG00000027405 |
| H. sapiens |
ENSP00000388497 |
| A. mellifera |
GB14895-PA |
| P. vanderplanki |
Pv.09311 |
| P. humanus |
PHUM027990-PA |
| T. castaneum |
TC012306 |
| A. gambiae |
AGAP002063 |
| N. vitripennis |
NV17016-PA |
| A. aegypti |
AAEL017421 |
| D. plexippus |
DPOGS206260PA |
| H. melpomene |
HMEL013126-PA |
| B. mori |
BGIBMGA010739-TA |
| C. quinquefasciatus |
CPIJ003353 |
| S. invicta |
SI2.2.0_14027 |
| H. sapiens |
ENSP00000370589 |