MidgeBase gene description page [Pn.15420]
Outline
| Gene ID | Pn.15420 |
| Type | Protein coding gene |
| Scaffold | PnScaf30192 |
| Start | 5188 |
| End | 9278 |
| Direction | - |
Sequence
Transcript: 618 (bp)
ATGTTTTCCTGTTTTTCTTCTGATGAAAGTCATCAAGAACCAATGGCAGCAATTCGTAAGAAATTAGTTATTGTCGGCGATGGTGCATGTGGCAAGACCTGCCTGCTTATTGTATTCAGTAAAGATCAATTCCCCGAAGTTTATGTGCCAACAGTTTTTGAGAATTATGTGGCTGATATCGAAGTGGATGGAAAGCAGGTCGAACTAGCGCTATGGGATACCGCTGGACAAGAAGACTACGACAGATTGCGTCCGTTGAGCTATCCAGACACAGATGTTATTCTGATGTGTTTCTCCGTAGATTCACCTGATTCGTTGGAAAATATTCCTGAAAAGTGGACGCCTGAGGTGAAACATTTTTGCCCAAATGTACCAATCATTTTAGTCGGTAACAAAAAAGATCTCAGAAACGATCCGCACACTATTAAAGAACTGGCAAAAATGAAGCAGGAGCCCGTAAAAACATCGGAAGGCAAGGCGATGTTTGAGAAAATAAACGCATTTGCTTATTTGGAATGTTCAGCCAAATCAAAGGAAGGTGTACGCGAAGTATTTGAAACGGCAACAAGAGCTGCATTGCAAGTGAAAAAGAAGAAGAAGAATCGATGTATTATGCTT
Protein: 206 (aa)
MFSCFSSDESHQEPMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPHTIKELAKMKQEPVKTSEGKAMFEKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKKNRCIML
| Type | Start | End | Length |
| CDS |
5191 |
5460 |
270 |
| CDS |
5577 |
5701 |
125 |
| CDS |
5793 |
5817 |
25 |
| CDS |
7810 |
7970 |
161 |
| CDS |
9242 |
9278 |
37 |
| intron |
5461 |
5576 |
116 |
| intron |
5702 |
5792 |
91 |
| intron |
5818 |
7809 |
1992 |
| intron |
7971 |
9241 |
1271 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001688510 |
AGAP005160-PA [Anopheles gambiae str. PEST] ref|XP_001688512.1| AGAP005160-PB [Anopheles gambiae str. PEST] gb|EDO64093.1| AGAP005160-PA [Anopheles gambiae str. PEST] gb|EDO64095.1| AGAP005160-PB [Anopheles gambiae str. PEST] |
1e-103 |
| InterPro |
IPR002041 |
Ran GTPase |
|
| InterPro |
IPR001806 |
Small GTPase superfamily |
|
| InterPro |
IPR005225 |
Small GTP-binding protein domain |
|
| InterPro |
IPR020849 |
Small GTPase superfamily, Ras type |
|
| InterPro |
IPR003579 |
Small GTPase superfamily, Rab type |
|
| InterPro |
IPR003578 |
Small GTPase superfamily, Rho type |
|
| Gene Ontology(BP) |
GO:0006886 |
intracellular protein transport |
|
| Gene Ontology(BP) |
GO:0006913 |
nucleocytoplasmic transport |
|
| Gene Ontology(BP) |
GO:0007165 |
signal transduction |
|
| Gene Ontology(BP) |
GO:0006184 |
GTP catabolic process |
|
| Gene Ontology(BP) |
GO:0007264 |
small GTPase mediated signal transduction |
|
| Gene Ontology(BP) |
GO:0015031 |
protein transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0005525 |
GTP binding |
|
| Gene Ontology(MF) |
GO:0003924 |
GTPase activity |
|
| Pfam |
PF00025.16 |
ADP-ribosylation factor family |
9.5e-11 |
| Pfam |
PF00009.22 |
Elongation factor Tu GTP binding domain |
2e-05 |
| Pfam |
PF00071.17 |
Ras family |
2.9e-58 |
| Pfam |
PF09439.5 |
Signal recognition particle receptor beta subunit |
0.018 |
| Pfam |
PF08477.8 |
Miro-like protein |
3.6e-17 |
| Pfam |
PF04670.7 |
Gtr1/RagA G protein conserved region |
0.027 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. melanogaster |
FBgn0014020 |
| A. aegypti |
AAEL013139 |
| H. sapiens |
ENSP00000390823 |
| M. musculus |
ENSMUSG00000007815 |
| H. sapiens |
ENSP00000358656 |
| H. melpomene |
HMEL004161-PA |
| T. castaneum |
TC009158 |
| D. plexippus |
DPOGS215932PA |
| A. gambiae |
AGAP005160 |
| H. sapiens |
ENSP00000285735 |
| N. vitripennis |
NV12244-PB |
| A. mellifera |
GB13135-PA |
| H. sapiens |
ENSP00000400175 |
| H. sapiens |
ENSP00000358651 |
| H. sapiens |
ENSP00000358647 |
| H. sapiens |
ENSP00000358646 |
| H. sapiens |
ENSP00000345236 |
| N. vitripennis |
NV12244-PA |
| P. humanus |
PHUM309390-PA |
| S. invicta |
SI2.2.0_15432 |
| P. vanderplanki |
Pv.02325 |
| H. sapiens |
ENSP00000358652 |
| H. sapiens |
ENSP00000434877 |