MidgeBase gene description page [Pn.15386]
Outline
| Gene ID | Pn.15386 |
| Type | Protein coding gene |
| Scaffold | PnScaf29963 |
| Start | 5024 |
| End | 10324 |
| Direction | - |
Sequence
Transcript: 2337 (bp)
ATGGAGACAATAGAGGAGATAATCGAGCAGGAAATAGTGGAGCCACTGGTGGAGGAGACACATCACACACATCACATACAATCACACCGTACTCATCGCCACCATCATCACAATGGTTCAATTGTTATGGTTAATACTCAGACCGGTCAGATCATGCATCGCGGTGGCGGCGGTCACGAAATGAACAATAATGAGCAATTAGACCATCAACGTGGTCGCATAATAACACACGCCAGCCAGGCGGTTCCCGGACTCGACATGATCAAGCAGGAGCATCCTTGCGCAGAGCTAGACGCCCAACTCGATCAGCACCACCACCAGCAGCACCAACAACAGCAACAACAGCAGCACCAGAAGCAGGAGACGCTGTCAGTGATTGTGCAGCCGCACGACGACTCGCACGACTCCTCGCAAATCCTCAGCCCCGACTCGGGTCCCTGCACGGAGATCATCGACGCGAGCGACTTTCGGGCGATGAACGAGCCCACGTACCAAACGCTCACCTCCGTCAATGGCCGCATGTCGCCGCCCGGCTTCAGCCCGAACTCGAGCTACGCCACACTCACACCACTTCAGCCTTTGCCGCCCATCTCGACCATGTCCGATAAGTTCGCTTACGGCCACAGTCACGGTCTCGGCGTGAACTCACCCTACACATACGACAAATCACCGTCGATGGACATATCACCGCCTCACAGCTACTCGCCGATTCCGCAATCAATCTACAGTCAAAATGGCCTTCCATCACCCCAGAAGAGCATGTCGCCCGGGTACGAGTCGCCCTACAGCAGCCACCGCGACTTACTCGCGTCGACGCCGAGCGCGGCGCGCACTAACGGCAGCGGCACGAACGTTCCCGATCAAGCGTCGCCGGCATCACCGCCACATAGCTACTCGCCGCTGCCGCAGTCCGTCTACAACGGCATCCGGCAGAACGGCAGCAACGGCCAACAGCAACAGCCACCACCACCGCCGCCGTCGCAGCAAAACATTTCGATCACGACGTCGGCGCCGAGTCCGACGCTGAGCGCGCAATCGAACGAACTGCACTCCCCGGTCGACCAGCAGATGGACAAGCTCTGGAACGGCAAGATGATGGAGTCGCCGTCGAATGTCCACCATAATGGCTCGCAGTCGGCCTTCGTGCAGATGAGCGGCAATGGCGGACATCACATGCCGTCGCAGCAGCAGCAGCAGCCGCTTCACCATCACAATCAGAATAATCGGGAGCTTCTCAGCGGCAGCAGCAGCGTGTCGCCTGTTGCGCCACTCATTCAGCGGGGAGCCGACAATACCGGAAGCAATAGCAATACGACATCGAGTGCCGTGGCAACCAAAAGCAGTAAACTGTCGTCGAGTGCATCGCTGTCGCTGTCGAGCGATGTCGAGGAGATCAACACAAAAGAGCTGGCGCAGCGCATTAGTGCCGAGTTGAAGCGCTACAGCATTCCACAAGCAATCTTCGCCCAACGTGTCTTGTGCCGGTCGCAGGGAACACTGTCGGATCTGCTGCGAAATCCGAAGCCGTGGTCGAAGTTGAAGTCTGGCCGCGAGACGTTCAGAAGAATGGCAAAGTGGCTGCAGGAGCCCGAGTATCAGAGGATGTCAGCATTGAGGCTAGCAGACAGCTGTAAGCGAAAGGACGAGAGCGATCACGTGCAGACGCCGAAGAAGCCGCGACTGGTGTTCACCGACCTGCAGCGACGTACCTTACAAGCAATATTCAAAGAGACAAAGCGTCCATCGAAGGAGATGGTTGTGACGATTGCGCGGCAGCTCTGCCTGCAAGCCACCACAGTCGGCAACTTTTTCATGAACTCGCGCCGTCGGTCGTCGGACAAGTGGCAGGAGGAGGCGCACGACGACACCGAGGACAATGACGGCAACGAGGACGACGACGAGGATGACGACGACACGGGCGACGACGAGTGTCACATGGACGCGGTGCAGCAGCAGGCGACCAAGCAGCAGATCCAGTACCACTTGCAGCAGCACCACGCCCAGCAGCAGGCACAGAACGCGGCGCACGACGAGATCGCGACCGCCACCGCAACCGCCACGACCGGCGCGTCCAAGTACTACAACAGCCACCACCATCATGGCATGCCGCGAGGTGGCGGCGGCGCTGGCGCCCCCACGACCGACCACGTCGGCGGAGGTGGCGGCGGCAACAACAACAACAACGGCTTCAGCAGCGACGAGTCGACGGACGGCGACAAGCAGATCATGATGCCGGTGGTGGGTACGGACGACGAGGACGAGGAGCACCAGTCGGACGACGACTACATCGGATTGTATGACAACGGCGAGGCCCTCAACAAGCTCGTCGACGAGTTT
Protein: 779 (aa)
METIEEIIEQEIVEPLVEETHHTHHIQSHRTHRHHHHNGSIVMVNTQTGQIMHRGGGGHEMNNNEQLDHQRGRIITHASQAVPGLDMIKQEHPCAELDAQLDQHHHQQHQQQQQQQHQKQETLSVIVQPHDDSHDSSQILSPDSGPCTEIIDASDFRAMNEPTYQTLTSVNGRMSPPGFSPNSSYATLTPLQPLPPISTMSDKFAYGHSHGLGVNSPYTYDKSPSMDISPPHSYSPIPQSIYSQNGLPSPQKSMSPGYESPYSSHRDLLASTPSAARTNGSGTNVPDQASPASPPHSYSPLPQSVYNGIRQNGSNGQQQQPPPPPPSQQNISITTSAPSPTLSAQSNELHSPVDQQMDKLWNGKMMESPSNVHHNGSQSAFVQMSGNGGHHMPSQQQQQPLHHHNQNNRELLSGSSSVSPVAPLIQRGADNTGSNSNTTSSAVATKSSKLSSSASLSLSSDVEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMAKWLQEPEYQRMSALRLADSCKRKDESDHVQTPKKPRLVFTDLQRRTLQAIFKETKRPSKEMVVTIARQLCLQATTVGNFFMNSRRRSSDKWQEEAHDDTEDNDGNEDDDEDDDDTGDDECHMDAVQQQATKQQIQYHLQQHHAQQQAQNAAHDEIATATATATTGASKYYNSHHHHGMPRGGGGAGAPTTDHVGGGGGGNNNNNGFSSDESTDGDKQIMMPVVGTDDEDEEHQSDDDYIGLYDNGEALNKLVDEF
| Type | Start | End | Length |
| CDS |
5027 |
5327 |
301 |
| CDS |
5382 |
5689 |
308 |
| CDS |
6574 |
6677 |
104 |
| CDS |
7907 |
8039 |
133 |
| CDS |
8099 |
8308 |
210 |
| CDS |
8675 |
9324 |
650 |
| CDS |
9415 |
9753 |
339 |
| CDS |
9826 |
9924 |
99 |
| CDS |
10132 |
10324 |
193 |
| intron |
5328 |
5381 |
54 |
| intron |
5690 |
6573 |
884 |
| intron |
6678 |
7906 |
1229 |
| intron |
8040 |
8098 |
59 |
| intron |
8309 |
8674 |
366 |
| intron |
9325 |
9414 |
90 |
| intron |
9754 |
9825 |
72 |
| intron |
9925 |
10131 |
207 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFA10967 |
hypothetical protein TcasGA2_TC004129 [Tribolium castaneum] |
1e-79 |
| InterPro |
IPR001356 |
Homeodomain |
|
| InterPro |
IPR010982 |
Lambda repressor-like, DNA-binding domain |
|
| InterPro |
IPR009057 |
Homeodomain-like |
|
| InterPro |
IPR003350 |
Homeodomain protein CUT |
|
| Gene Ontology(BP) |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Gene Ontology(MF) |
GO:0043565 |
sequence-specific DNA binding |
|
| Gene Ontology(MF) |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
|
| Pfam |
PF02376.10 |
CUT domain |
5.1e-31 |
| Pfam |
PF05920.6 |
Homeobox KN domain |
0.05 |
| Pfam |
PF00046.24 |
Homeobox domain |
2.7e-10 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. aegypti |
AAEL002359 |
| D. plexippus |
DPOGS214467PA |
| H. melpomene |
HMEL003746-PA |
| D. melanogaster |
FBgn0028996 |
| N. vitripennis |
NV10665-PA |
| B. mori |
BGIBMGA013353-TA |
| T. castaneum |
TC004129 |
| M. musculus |
ENSMUSG00000043013 |
| C. quinquefasciatus |
CPIJ006386 |
| H. sapiens |
ENSP00000302630 |
| H. sapiens |
ENSP00000419185 |
| P. humanus |
PHUM432770-PA |
| P. vanderplanki |
Pv.07436 |
| A. gambiae |
AGAP000061 |
| M. musculus |
ENSMUSG00000045991 |
| H. sapiens |
ENSP00000262095 |