MidgeBase gene description page [Pn.15379]
Outline
| Gene ID | Pn.15379 |
| Type | Protein coding gene |
| Scaffold | PnScaf29901 |
| Start | 12040 |
| End | 12974 |
| Direction | + |
Sequence
Transcript: 813 (bp)
ATGTCGTCAAAAAACGAAGAGGGAAAGCAAGAGAAGGAGTTGGACGTTTCAAATGCCAATCGCGGTGTGTGGCTAGTGAAAGTTCCTAAATATATAGCGAAGAAATGGGAGAAAGCCAACGGAGATATGGAAGTCGGAAAATTAAAGATAGTAAAGTATCCGGGTCAAAAGTCTCAGGTATCGCTCTCTTTATCGGAAGCAACGCTCAAAATAGATACAGATGAGGACATTCCGAAGGACCATAGATTTGATGTTTTGGCTGTGAACAAACAGACTCTCGGTGTCTTTAGTCAGCACATTGATCCCGATAAGTCAGACAAAATCTTCATGGAAGGAACGATCGTTGAGAAACTCGAGTGCCGGCCGTATGCAGACAATACTTACATGAAGCTCAAAGCCATGTCCATACGAAATGCTTCGCTGCCAAAAAGACGAGTAGAACAGCTAGATACAGTCGTGACCACATTCAAGCCAATATCAGATCACAAGCATAATATTGAGTACGAGAAGAAGAAGAAGACCGACGGGAAGAAATCTCGAACGGACAAAAATGCCGTTATGGACATGCTGTTCAATGCATTCGAGAAGCATCAGTATTACAACATCAAGGACCTGGTGACGATCACAAACCAGCCCATCTCATACTTGAAGGAGATTCTTAAGGAAATCTGCGAGTACAGCGTCAAGAACCCGCACAAAAATACTTGGCACTTGAAGGCCGAATATCGGCACTACAGCGAGGAGAAGAAGGCGGAGAAGGAAGCTAGCGCGGCTGCCGAGGATAAGATAAGCGACAGCGATGATGATGACTTT
Protein: 271 (aa)
MSSKNEEGKQEKELDVSNANRGVWLVKVPKYIAKKWEKANGDMEVGKLKIVKYPGQKSQVSLSLSEATLKIDTDEDIPKDHRFDVLAVNKQTLGVFSQHIDPDKSDKIFMEGTIVEKLECRPYADNTYMKLKAMSIRNASLPKRRVEQLDTVVTTFKPISDHKHNIEYEKKKKTDGKKSRTDKNAVMDMLFNAFEKHQYYNIKDLVTITNQPISYLKEILKEICEYSVKNPHKNTWHLKAEYRHYSEEKKAEKEASAAAEDKISDSDDDDF
| Type | Start | End | Length |
| CDS |
12040 |
12154 |
115 |
| CDS |
12215 |
12397 |
183 |
| CDS |
12457 |
12971 |
515 |
| intron |
12155 |
12214 |
60 |
| intron |
12398 |
12456 |
59 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001868006 |
transcription initiation factor IIF subunit beta [Culex quinquefasciatus] gb|EDS25908.1| transcription initiation factor IIF subunit beta [Culex quinquefasciatus] |
3e-97 |
| InterPro |
IPR011991 |
Winged helix-turn-helix transcription repressor DNA-binding |
|
| InterPro |
IPR011039 |
Transcription Factor IIF, Rap30/Rap74, interaction |
|
| InterPro |
IPR003196 |
Transcription initiation factor IIF, beta subunit |
|
| Gene Ontology(BP) |
GO:0006367 |
transcription initiation from RNA polymerase II promoter |
|
| Gene Ontology(CC) |
GO:0005674 |
transcription factor TFIIF complex |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF02270.10 |
Transcription initiation factor IIF, beta subunit |
4.6e-77 |
| Pfam |
PF11470.3 |
GLUT4 regulating protein TUG |
0.094 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS211177PA |
| N. vitripennis |
NV16996-PA |
| P. humanus |
PHUM079820-PA |
| A. aegypti |
AAEL013998 |
| C. quinquefasciatus |
CPIJ017673 |
| T. castaneum |
TC013555 |
| A. mellifera |
GB10781-PA |
| S. invicta |
SI2.2.0_80185 |
| H. sapiens |
ENSP00000340823 |
| P. vanderplanki |
Pv.07891 |
| B. mori |
BGIBMGA003166-TA |
| M. musculus |
ENSMUSG00000067995 |
| H. melpomene |
HMEL012416-PA |
| A. gambiae |
AGAP007002 |
| D. melanogaster |
FBgn0010421 |