MidgeBase gene description page [Pn.15377]
Outline
| Gene ID | Pn.15377 |
| Type | Protein coding gene |
| Scaffold | PnScaf29884 |
| Start | 1018 |
| End | 2056 |
| Direction | - |
Sequence
Transcript: 798 (bp)
ATGCTGCGCCGGGCGATCAACTACTGGTACGACGCGATGGACAACAGGTCTGATCCTCGCGTCAATGAGTATTTTCTCATGTCGTCGCCGATTCCCACAACAATCATCTGTCTGTGCTACGTCTATGCAGTAAAGAAAATACTGCCGCAATTTATGGAGCACCGAAAGCCACTGAACCTCAAGAAAATCCTGATAGTCTACAACTTGTGCCAAGCGGTGTTTAGCTTCGGCCTGTTCGTCGAAGCGTCGCGCATTGGCTGGTTCCGCGACTACAACTGGAGATGCCAGCCGATCGATCGCTCGCGCAGCGATCTCGCGATGAGAATGGTGCGCGTGTCATGGCTCTACTATGTCAGCAAATATTCAGAGTTTCTCGACACGATCTTCTTCATCTTGAGAAAGCGAAACGACTTGGTCACAAACCTGCACGTCATTCATCACGGAATCATGCCGTTCAGCGTCTGGTGGGGGCTGAAATTCTTGCCAGGCGGGCACATCACGTTTTTCGGCTTCCTCAACAGCTTCGTTCACGTCGTGATGTACACGTACTACATGCTGGCTGCCATGGGCCGCGAGATGCAGAGGTACCTGTGGTGGAAAAAGTACCTCACCATGTTCCAGATGATCCAGTTCACGGTGGTGCTTCTGCACTCGTGCCAGCTCTTCCTCCACAATCCCTGCAACTACCCCATCCTGTCCTCGTACTGGACCTTGGGCCACAGCATCCTCTTCCTCTCGCTCTTCACCAACTTTTACATCCAGGCGTACATAAAGAGCAAGAAGAAGAAGAAGACAAAG
Protein: 266 (aa)
MLRRAINYWYDAMDNRSDPRVNEYFLMSSPIPTTIICLCYVYAVKKILPQFMEHRKPLNLKKILIVYNLCQAVFSFGLFVEASRIGWFRDYNWRCQPIDRSRSDLAMRMVRVSWLYYVSKYSEFLDTIFFILRKRNDLVTNLHVIHHGIMPFSVWWGLKFLPGGHITFFGFLNSFVHVVMYTYYMLAAMGREMQRYLWWKKYLTMFQMIQFTVVLLHSCQLFLHNPCNYPILSSYWTLGHSILFLSLFTNFYIQAYIKSKKKKKTK
| Type | Start | End | Length |
| CDS |
1021 |
1358 |
338 |
| CDS |
1459 |
1594 |
136 |
| CDS |
1661 |
1849 |
189 |
| CDS |
1922 |
2056 |
135 |
| intron |
1359 |
1458 |
100 |
| intron |
1595 |
1660 |
66 |
| intron |
1850 |
1921 |
72 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_971599 |
PREDICTED: similar to CG31522 CG31522-PB [Tribolium castaneum] gb|EFA09795.1| hypothetical protein TcasGA2_TC011937 [Tribolium castaneum] |
1e-87 |
| InterPro |
IPR002076 |
GNS1/SUR4 membrane protein |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Pfam |
PF01151.13 |
GNS1/SUR4 family |
2.1e-63 |
| Pfam |
PF06570.6 |
Protein of unknown function (DUF1129) |
3.5 |
| Pfam |
PF07884.9 |
Vitamin K epoxide reductase family |
0.039 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes