MidgeBase gene description page [Pn.15363]
Outline
| Gene ID | Pn.15363 |
| Type | Protein coding gene |
| Scaffold | PnScaf29813 |
| Start | 2791 |
| End | 4114 |
| Direction | - |
Sequence
Transcript: 588 (bp)
ATGAAGGCTATGAATACGCTAATGAAATGTCTCGCAATCTTCTTGCTCGCATCGATGGTGCTGGCGACCGAGTCCGGAGATGAAACCCGCGCCCGACTATTAGTCTCAAAGCAAATCCTCAACAAATATCTCGTGGAGCAACGTGACGTTTTGGTCAAGTACACTCTTTTCAATGTCGGAAATGGACCAGCCACGCACGTCACCCTGGAGGACCAGGGCTTCCCCGCTGAGGCCTTCGACCTGGTCAGTGGCAAGCTCGAGGTTCAGCTCGACCGAATCGCTCCGGCCACGAACGTCACGCACGTTGTTGTTGTACGCCCGCGTGCCCACGGATACTTCAACTTTACGGCCGCCGCCGTCAGCTATCGTCCCGTCGAGTCGTCACCATCCCTCCAGTACGCCGTGAGTTCCGAGCCAGGCGAAGGCGGAATCATCAACTTGGCCCAATTTAACAAGCAATTCTCGTCGCACTTCCTCGACTGGATTGCCTTCGTCATCATGTGTCTGCCGACCGTCGTCATTCCCTACAGCCTATTCCTTAAGTCAAAGAACAAGTACGAGTTGCTCGCACAGAAGAAGAAGGCCAAC
Protein: 196 (aa)
MKAMNTLMKCLAIFLLASMVLATESGDETRARLLVSKQILNKYLVEQRDVLVKYTLFNVGNGPATHVTLEDQGFPAEAFDLVSGKLEVQLDRIAPATNVTHVVVVRPRAHGYFNFTAAAVSYRPVESSPSLQYAVSSEPGEGGIINLAQFNKQFSSHFLDWIAFVIMCLPTVVIPYSLFLKSKNKYELLAQKKKAN
| Type | Start | End | Length |
| CDS |
2794 |
2991 |
198 |
| CDS |
3054 |
3434 |
381 |
| CDS |
4106 |
4114 |
9 |
| intron |
2992 |
3053 |
62 |
| intron |
3435 |
4105 |
671 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ACN69153 |
translocon-associated complex TRAP, beta subunit [Stomoxys calcitrans] |
4e-62 |
| InterPro |
IPR008856 |
Translocon-associated protein subunit beta |
|
| Gene Ontology(CC) |
GO:0005783 |
endoplasmic reticulum |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Pfam |
PF05753.9 |
Translocon-associated protein beta (TRAPB) |
5.2e-65 |
| Pfam |
PF08107.6 |
Pleurocidin family |
0.09 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV14817-PA |
| H. melpomene |
HMEL009024-PA |
| S. invicta |
SI2.2.0_10588 |
| P. vanderplanki |
Pv.04867 |
| M. musculus |
ENSMUSG00000041355 |
| A. gambiae |
AGAP005861 |
| D. plexippus |
DPOGS206370PA |
| D. melanogaster |
FBgn0011016 |
| T. castaneum |
TC001756 |
| A. aegypti |
AAEL010032 |
| H. sapiens |
ENSP00000434306 |
| C. quinquefasciatus |
CPIJ005682 |
| B. mori |
BGIBMGA005769-TA |
| A. mellifera |
GB17592-PA |
| H. sapiens |
ENSP00000295702 |
| P. humanus |
PHUM390500-PA |