MidgeBase gene description page [Pn.15286]
Outline
| Gene ID | Pn.15286 |
| Type | Protein coding gene |
| Scaffold | PnScaf29263 |
| Start | 61400 |
| End | 62479 |
| Direction | - |
Sequence
Transcript: 858 (bp)
ATGTTTCGCAATCAATATGACAGCGATGTTACAGTCTGGAGTCCACAAGGGCGGATCCATCAAGTTGAATACGCCATGGAGGCTGTAAAGTTAGGCTCAGCGACAGTCGGCTTGAAGTCGAAAGACTATGCAGTTCTTATTGCCTTAAAGCGGGCCACATCAGAATTGTCTGCACATCAGCAAAAGATTCTCCGCATTGACGACCACATCGGTATTTCTATGGCCGGAATCACTGCCGATGCTCGAGTTTTGAGCCGCTATATGCGTCAGGAATGCATCAATCACAAATATTCTTACGGTCGCAACTATCCTGTCGGCCGTCTTATCAATTTGCTGGGCCTGAAAATGCAGGTTTGCACTCAACGCTACGATCGTCGTCCTTATGGAGTTGGCCTTCTAGTCGCTGGCTACGATGACCAAGGGCCGCACATCTACCAAACTTGTCCGAGCGCAAACTTTTACGACTGCAAGGCCATGGCTATAGGCGCACGCTCTCAAAGCGCCAGAACCTATCTGGAGAAGCATTTGAACGAATTCAAGGACTGCGAGTTGTCCGATTTGATAAATCACGGTGTGCGTGCACTTGCCGGCACTTTGCCGAACGAGACAAAGTTGAACAACAAGAACTTGTCAATTTGCGTCGTCGGTAAGAACTACAAGTTCCATTGCTTAGACGAGAGCGAATTGGAGAAATACATCAACGCTGAGATTTCTGGAACTCAACCGACACCAGCAGCTGGTGATCCGTCAGAGGTAGGAGTGGGGCGATCAGAAAGAAGACTTGGCGAGGAGCAGCCTCCTTTAAACCAGCCGGATCCAACCCCAGAAGAGCCGGCAACCGAGGAGCGCAGAATGCAG
Protein: 286 (aa)
MFRNQYDSDVTVWSPQGRIHQVEYAMEAVKLGSATVGLKSKDYAVLIALKRATSELSAHQQKILRIDDHIGISMAGITADARVLSRYMRQECINHKYSYGRNYPVGRLINLLGLKMQVCTQRYDRRPYGVGLLVAGYDDQGPHIYQTCPSANFYDCKAMAIGARSQSARTYLEKHLNEFKDCELSDLINHGVRALAGTLPNETKLNNKNLSICVVGKNYKFHCLDESELEKYINAEISGTQPTPAAGDPSEVGVGRSERRLGEEQPPLNQPDPTPEEPATEERRMQ
| Type | Start | End | Length |
| CDS |
61403 |
62006 |
604 |
| CDS |
62062 |
62312 |
251 |
| CDS |
62477 |
62479 |
3 |
| intron |
62007 |
62061 |
55 |
| intron |
62313 |
62476 |
164 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001650228 |
proteasome subunit alpha type [Aedes aegypti] gb|EAT32763.1| proteasome subunit alpha type [Aedes aegypti] |
1e-110 |
| InterPro |
IPR000426 |
Proteasome, alpha-subunit, N-terminal domain |
|
| InterPro |
IPR001353 |
Proteasome, subunit alpha/beta |
|
| InterPro |
IPR023332 |
Proteasome A-type subunit |
|
| Gene Ontology(BP) |
GO:0051603 |
proteolysis involved in cellular protein catabolic process |
|
| Gene Ontology(BP) |
GO:0006511 |
ubiquitin-dependent protein catabolic process |
|
| Gene Ontology(CC) |
GO:0019773 |
proteasome core complex, alpha-subunit complex |
|
| Gene Ontology(CC) |
GO:0005839 |
proteasome core complex |
|
| Gene Ontology(MF) |
GO:0004175 |
endopeptidase activity |
|
| Gene Ontology(MF) |
GO:0004298 |
threonine-type endopeptidase activity |
|
| Pfam |
PF00227.21 |
Proteasome subunit |
3.4e-57 |
| Pfam |
PF11824.3 |
Protein of unknown function (DUF3344) |
0.0041 |
| Pfam |
PF10584.4 |
Proteasome subunit A N-terminal signature |
1.8e-13 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS213746PA |
| A. mellifera |
GB11284-PA |
| A. aegypti |
AAEL013089 |
| N. vitripennis |
NV12493-PA |
| P. vanderplanki |
Pv.12012 |
| H. sapiens |
ENSP00000379676 |
| A. aegypti |
AAEL015007 |
| B. mori |
BGIBMGA009234-TA |
| P. humanus |
PHUM005720-PA |
| H. sapiens |
ENSP00000414359 |
| H. sapiens |
ENSP00000441166 |
| M. musculus |
ENSMUSG00000030751 |
| C. quinquefasciatus |
CPIJ000897 |
| S. invicta |
SI2.2.0_01840 |
| H. melpomene |
HMEL013910-PA |
| D. melanogaster |
FBgn0250843 |
| A. gambiae |
AGAP010253 |
| H. sapiens |
ENSP00000379675 |
| T. castaneum |
TC000258 |