MidgeBase gene description page [Pn.15276]
Outline
| Gene ID | Pn.15276 |
| Type | Protein coding gene |
| Scaffold | PnScaf29263 |
| Start | 22940 |
| End | 24147 |
| Direction | - |
Sequence
Transcript: 1080 (bp)
ATGCAAGCATTTCTAAAAGGACAGAAGCTATCGTCGCAGAAGCCTTCAACATCCGGAGCTCAAAAGAAAGAGAAGAAGCAGAGAGAAAGGCCAGTGCCATGGGTTGAGAAATATCGGCCGAGAAAAGTTGATGATGTCGTGGAGCAACATGAAGTCTGTGCTGTGCTTAGAGACAGTTTAACCACATCAGATCTGCCAAATTTACTACTCTACGGACCACCGGGAACTGGAAAAACATCGACGATTCTCGCAGCCGCTCGCCAGCTCTTTGGCGACTTCCTGAAAGAGCGAGTTCTAGAGCTCAACGCTTCAGATGACAGAGGAATTGCGGTCATAAGAAGTAAAGTGAAGAACTTTGCTCAGCAAAAGGCGAGCAACATTCGACCAGACGGAAAGCCGTGTCCACCATTCAAGATCATAATCCTCGACGAGGCTGATGCTATGACCCACGCTGCTCAGGCAGCTCTTCGCAGGACGATGGAGAAGGAAACGCGAACGACAAGATTCTGCTTGGTCTGCAACTATGTCTCGAGAATCATTGAGCCGATCACGTCGCGTTGCACCAAGTTCCGATTCATTTCGCTGCACGAGGAGAAAATTATCGAGAGACTAAAGATGATTTGCGAAGCAGAAAAGGTGAATATTGAGGAGGAAGCCCTGAAGAGTATCGTGGAGACTTCGGGCGGAGACATGCGAAAAGCCATCACGACACTGCAGTCTTGCTATCGGCTCAAATGCGGAACAGACTTGAAAGAAAGTCAAATCACACTGCTCGATGTGACGGAAATGTCTGGTATTGTCCCTGAAAAATACTTGGACGATTTTATGTCCGTCACAAGAAGCAGGAAGATCAACTTGCTCGAAAAGTTTTGCGACGAGTTCACGTTCGAAGCGTACAGCGTCTCTCAGTTCTTCGAACAACTCCACGATAAAATGATTATGGATGACACAATCACAAACGACCAGAAAGCCCTCATTTTCGATAAACTCGGCGAGTCTGCATACAGGTTGACGACGGGCGGAAGCGAATTTTTGCAGCTGATTGATTTCGGAACACTCTGTATTTTAGCGTTTGGAAAG
Protein: 360 (aa)
MQAFLKGQKLSSQKPSTSGAQKKEKKQRERPVPWVEKYRPRKVDDVVEQHEVCAVLRDSLTTSDLPNLLLYGPPGTGKTSTILAAARQLFGDFLKERVLELNASDDRGIAVIRSKVKNFAQQKASNIRPDGKPCPPFKIIILDEADAMTHAAQAALRRTMEKETRTTRFCLVCNYVSRIIEPITSRCTKFRFISLHEEKIIERLKMICEAEKVNIEEEALKSIVETSGGDMRKAITTLQSCYRLKCGTDLKESQITLLDVTEMSGIVPEKYLDDFMSVTRSRKINLLEKFCDEFTFEAYSVSQFFEQLHDKMIMDDTITNDQKALIFDKLGESAYRLTTGGSEFLQLIDFGTLCILAFGK
| Type | Start | End | Length |
| CDS |
22943 |
23799 |
857 |
| CDS |
23865 |
23976 |
112 |
| CDS |
24037 |
24147 |
111 |
| intron |
23800 |
23864 |
65 |
| intron |
23977 |
24036 |
60 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001843297 |
replication factor C subunit 4 [Culex quinquefasciatus] gb|EDS31799.1| replication factor C subunit 4 [Culex quinquefasciatus] |
1e-133 |
| InterPro |
IPR003959 |
ATPase, AAA-type, core |
|
| InterPro |
IPR003593 |
AAA+ ATPase domain |
|
| InterPro |
IPR008921 |
DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal |
|
| InterPro |
IPR013748 |
Replication factor C, C-terminal domain |
|
| Gene Ontology(BP) |
GO:0006260 |
DNA replication |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0017111 |
nucleoside-triphosphatase activity |
|
| Pfam |
PF13207.1 |
AAA domain |
0.044 |
| Pfam |
PF02562.11 |
PhoH-like protein |
0.094 |
| Pfam |
PF07728.9 |
AAA domain (dynein-related subfamily) |
0.0009 |
| Pfam |
PF13481.1 |
AAA domain |
0.069 |
| Pfam |
PF12846.2 |
AAA-like domain |
0.075 |
| Pfam |
PF06068.8 |
TIP49 C-terminus |
0.006 |
| Pfam |
PF01695.12 |
IstB-like ATP binding protein |
0.065 |
| Pfam |
PF08542.6 |
Replication factor C C-terminal domain |
6.1e-08 |
| Pfam |
PF13245.1 |
Part of AAA domain |
7.2e-06 |
| Pfam |
PF05673.8 |
Protein of unknown function (DUF815) |
0.0025 |
| Pfam |
PF13401.1 |
AAA domain |
3.3e-06 |
| Pfam |
PF13191.1 |
AAA ATPase domain |
2.3e-06 |
| Pfam |
PF13479.1 |
AAA domain |
3.4e-05 |
| Pfam |
PF13604.1 |
AAA domain |
0.0023 |
| Pfam |
PF01637.13 |
Archaeal ATPase |
0.0058 |
| Pfam |
PF03215.10 |
Rad17 cell cycle checkpoint protein |
1.9e-09 |
| Pfam |
PF13671.1 |
AAA domain |
0.086 |
| Pfam |
PF09848.4 |
Uncharacterized conserved protein (DUF2075) |
0.016 |
| Pfam |
PF00270.24 |
DEAD/DEAH box helicase |
0.03 |
| Pfam |
PF13177.1 |
DNA polymerase III, delta subunit |
8.2e-10 |
| Pfam |
PF01078.16 |
Magnesium chelatase, subunit ChlI |
0.0014 |
| Pfam |
PF00004.24 |
ATPase family associated with various cellular activities (AAA) |
1.4e-16 |
| Pfam |
PF13238.1 |
AAA domain |
0.07 |
| Pfam |
PF13173.1 |
AAA domain |
1.1e-05 |
| Pfam |
PF05496.7 |
Holliday junction DNA helicase ruvB N-terminus |
0.00066 |
| Pfam |
PF07726.6 |
ATPase family associated with various cellular activities (AAA) |
0.022 |
| Pfam |
PF13086.1 |
AAA domain |
3.4e-05 |
| Pfam |
PF06144.8 |
DNA polymerase III, delta subunit |
0.02 |
| Pfam |
PF04851.10 |
Type III restriction enzyme, res subunit |
0.0031 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA003377-TA |
| C. quinquefasciatus |
CPIJ001399 |
| H. sapiens |
ENSP00000376272 |
| S. invicta |
SI2.2.0_09794 |
| D. plexippus |
DPOGS213934PA |
| A. aegypti |
AAEL006788 |
| H. melpomene |
HMEL002844-PA |
| D. melanogaster |
FBgn0030871 |
| A. gambiae |
AGAP003093 |
| M. musculus |
ENSMUSG00000022881 |
| H. sapiens |
ENSP00000399769 |
| P. humanus |
PHUM591570-PA |
| T. castaneum |
TC008489 |
| N. vitripennis |
NV14615-PA |
| P. vanderplanki |
Pv.01197 |
| H. sapiens |
ENSP00000296273 |