MidgeBase gene description page [Pn.15275]
Outline
| Gene ID | Pn.15275 |
| Type | Protein coding gene |
| Scaffold | PnScaf29263 |
| Start | 22025 |
| End | 22880 |
| Direction | + |
Sequence
Transcript: 726 (bp)
ATGGAAGAGACTAAAGAAAAAGTGAAGAATAGTAATCAATCAAAGCAACTACCTAAAGATGCACAAGTAATAATTTCAATTTTGCGTGACATTGGTTTAGAGGATTTTGAGCCGAGAGTGATCAACCAGCTGCTGGAATTCACTTATCGATACGTCACTACGATCCTAGAAGATGCCAAAGTCTATGCAAACCACTCGAAAAAGAAGGGCATCGATCTGGAAGACGTAAAATTGGCCTCAACAATGCTTTTAGACAAACAATTCACCGGTCCTCCGCCAAGAGAAGTGCTCTTCGAAGTTGCGAAACAAAAGAACTCACAGCCACTGCCAACAATCAAGCCTCACAGCGGAATTCGGCTTCCGCCCGACCGTCACTGCTTGCTCGCTGCAAACTTCAAGCTGAGAGCAGTCTCGTCACAAGCACCCACCAAGAAACTCGTTAAGACAGCACTTGAAGGAAGCACAATCAAAACGAAGCTGGTGAGCTCAACGAGCGGCAATTCGCCCACCATGAACATCGGAATAAAGAAGAACACCACTCTGGGGCAGACAGTGAACAAAACGTCAAATGTCTCCATCCCCAAGCCAACGTTCAAAGTCTCAAAGCCTGTTACGAAGCCACTACCAACAGTCTCAAACGAGGCAGACGTAATCAAAATGGACGTCGACCAAGACGGTGCAATGAAGAAGCGGAAAAGATCAGAAGACGATTTCGACCATTTGGCT
Protein: 242 (aa)
MEETKEKVKNSNQSKQLPKDAQVIISILRDIGLEDFEPRVINQLLEFTYRYVTTILEDAKVYANHSKKKGIDLEDVKLASTMLLDKQFTGPPPREVLFEVAKQKNSQPLPTIKPHSGIRLPPDRHCLLAANFKLRAVSSQAPTKKLVKTALEGSTIKTKLVSSTSGNSPTMNIGIKKNTTLGQTVNKTSNVSIPKPTFKVSKPVTKPLPTVSNEADVIKMDVDQDGAMKKRKRSEDDFDHLA
| Type | Start | End | Length |
| CDS |
22025 |
22110 |
86 |
| CDS |
22171 |
22263 |
93 |
| CDS |
22331 |
22877 |
547 |
| intron |
22111 |
22170 |
60 |
| intron |
22264 |
22330 |
67 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001652244 |
tbp-associated factor [Aedes aegypti] gb|EAT41595.1| tbp-associated factor [Aedes aegypti] |
2e-60 |
| InterPro |
IPR003162 |
Transcription factor TAFII-31 |
|
| InterPro |
IPR009072 |
Histone-fold |
|
| Gene Ontology(BP) |
GO:0006352 |
transcription initiation, DNA-dependent |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Pfam |
PF07524.8 |
Bromodomain associated |
1.2e-07 |
| Pfam |
PF00125.19 |
Core histone H2A/H2B/H3/H4 |
0.0016 |
| Pfam |
PF02291.10 |
Transcription initiation factor IID, 31kD subunit |
2.3e-53 |
| Pfam |
PF07231.7 |
Hs1pro-1 N-terminus |
0.018 |
| Pfam |
PF00808.18 |
Histone-like transcription factor (CBF/NF-Y) and archaeal histone |
0.029 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000052293 |
| H. melpomene |
HMEL002988-PA |
| N. vitripennis |
NV10934-PA |
| H. sapiens |
ENSP00000427343 |
| H. sapiens |
ENSP00000460403 |
| H. sapiens |
ENSP00000425944 |
| D. plexippus |
DPOGS213170PA |
| D. melanogaster |
FBgn0000617 |
| P. humanus |
PHUM076550-PA |
| T. castaneum |
TC004292 |
| M. musculus |
ENSMUSG00000047242 |
| H. sapiens |
ENSP00000459150 |
| P. vanderplanki |
Pv.01196 |
| B. mori |
BGIBMGA007359-TA |
| H. sapiens |
ENSP00000370193 |
| H. sapiens |
ENSP00000339917 |
| A. aegypti |
AAEL006789 |
| H. sapiens |
ENSP00000460725 |
| H. sapiens |
ENSP00000459034 |
| C. quinquefasciatus |
CPIJ001398 |
| H. sapiens |
ENSP00000217893 |
| A. gambiae |
AGAP003094 |
| H. sapiens |
ENSP00000421873 |
| H. sapiens |
ENSP00000426283 |
| H. sapiens |
ENSP00000460768 |