MidgeBase gene description page [Pn.15161]
Outline
| Gene ID | Pn.15161 |
| Type | Protein coding gene |
| Scaffold | PnScaf28556 |
| Start | 252 |
| End | 1006 |
| Direction | - |
Sequence
Transcript: 378 (bp)
ATGTCTAAAGCCGATAAGGTCCAGAACCCACCGTCAGTTATTCTGCCCATTAACTTAAATCCCGAAAAATCCGGTTCAAGTCAAGATTTCAATTCCACCTCAAAACTTGCCTATGATTACGATGACTATAATCCTTTTGAACATCGATTAGTTGAAAATCCAAATACCACTGCTGGTGCATTGGCTCACTTGCTTAAAAGTTCCCTAGGAACTGGAATTTTAGCGATGCCAAATGCATTTAATAACGCTGGTTTGGTGTTTGCATCCATTATGACAGTAATTGTTGGTTTCCTTTGTACGCATTGTGTATGGATTTTGGTGAGTAGCTTTCCTCAATCATCGCGAATCTACCTATTACGATATTTTTCCGGAATAAGA
Protein: 126 (aa)
MSKADKVQNPPSVILPINLNPEKSGSSQDFNSTSKLAYDYDDYNPFEHRLVENPNTTAGALAHLLKSSLGTGILAMPNAFNNAGLVFASIMTVIVGFLCTHCVWILVSSFPQSSRIYLLRYFSGIR
| Type | Start | End | Length |
| CDS |
255 |
409 |
155 |
| CDS |
472 |
527 |
56 |
| CDS |
604 |
672 |
69 |
| CDS |
909 |
1006 |
98 |
| intron |
410 |
471 |
62 |
| intron |
528 |
603 |
76 |
| intron |
673 |
908 |
236 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFR27989 |
hypothetical protein AND_04693 [Anopheles darlingi] |
1e-26 |
| InterPro |
IPR013057 |
Amino acid transporter, transmembrane |
|
| Pfam |
PF01490.13 |
Transmembrane amino acid transporter protein |
2.6e-11 |
| Pfam |
PF11057.3 |
Cortexin of kidney |
0.079 |
| Pfam |
PF03222.8 |
Tryptophan/tyrosine permease family |
0.055 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes