MidgeBase gene description page [Pn.15141]
Outline
| Gene ID | Pn.15141 |
| Type | Protein coding gene |
| Scaffold | PnScaf28391 |
| Start | 104 |
| End | 1633 |
| Direction | - |
Sequence
Transcript: 1338 (bp)
ATGATTCTTGGAGTCGCGCGGTTAAGTGGAATTAATCTAGTTTCAAAGCCATTCTGCCGAGTTCTTAGCACACAACCGATACAGAGCTCGATTGAGCTGCACAATAATAAATATGAATCGGATGATTACTTCAATTTGACACCAAAAATTTTGACTTATCTCGACCAGAATTTGCATCTTAAAAAGCATCATCCTCTGTCGTTGATGAGACAGCGAATCGTCAACTTTTTTTACAGCGAGTATGCGAATCCAAAAGGAACTCCGCTGTTTTCTGTTTTCGACAGAATCAGTCCGATCGTGACCGTAAAGCAAAATTTTGACTCACTGCTGATTCCGGAAGATCATCCGAGTCGAGCTAAAAGCGACTGCTACTACATCAATCGCGAATACATGCTCCGAGCACATTGCACTGCTCATCAAAATGAATTGCTAAGGTCCGGTCTCGACAACTTTCTGATCGTTGGCGACGTCTATCGCAGGGACGAAATCGATGCCACTCACTTTCCTGTGTTTCATCAGGTCGATGCCGTTCGAGTGGTGCACAATGACAAGCTTTTTAAGAATAATCCGGATTTGGAGATTTTCGAGAAGAACTATAACGAGAGGGCCAACTTGTCGACAGTTGGCTCGTCAGAGAAGTGCATTGATCAAGTGAAACAGCCGTGCCACACTGTCGAGTCTGTCAAGCTCGTCGAGTACGAGATGAAGAATGTCCTCGAGCGACTCGTGATTTCACTTTTTGGTGAAAAGCTCAAATTCAGATGGGTCGATGCTTACTTTCCGTTCACTCAGCCTTCGTGGGAGCTGGAAATTTATCACAACGACAAGTGGATCGAAATTCTGGGCAGTGGAATAATGAGAAATGAAATTCTAAATAGGGCAGGAATTCACAATTCTATCGGCTACGCTTTCGGGCTGGGCCTGGAACGGTTGGCAATGATAATTTATAATATCCCCGACATCAGACTGTTTTGGAGCCAGGATTCCGGTTTTCTCTCCCAGTTCAATGAAAAAGACCTCAACAAAGCTATAAAATACAAACCCGTGTCACAATTTCCACAATGCAGCAATGATATCTCATTTTGGCTCCCCTCCGAGCTGTCTTTCGAAACATTTTCCTTGAATGATGTTTATGATGTGGTCAGAAACGTGGGCGGTGATATTGTGGAGCAAGTTTTGTTGCTCGACAAGTTCACTCATCCGAAAACGAAGAAAAATAGTCTCACTTTTCGCATCATCTATCGGCACATGGAACGAACCCTTACGCAGAATGAAGCCAACGACATGCATGCGACAATTTCAAAAGAACTGATTGATAAATACAATATTAAAATTCGT
Protein: 446 (aa)
MILGVARLSGINLVSKPFCRVLSTQPIQSSIELHNNKYESDDYFNLTPKILTYLDQNLHLKKHHPLSLMRQRIVNFFYSEYANPKGTPLFSVFDRISPIVTVKQNFDSLLIPEDHPSRAKSDCYYINREYMLRAHCTAHQNELLRSGLDNFLIVGDVYRRDEIDATHFPVFHQVDAVRVVHNDKLFKNNPDLEIFEKNYNERANLSTVGSSEKCIDQVKQPCHTVESVKLVEYEMKNVLERLVISLFGEKLKFRWVDAYFPFTQPSWELEIYHNDKWIEILGSGIMRNEILNRAGIHNSIGYAFGLGLERLAMIIYNIPDIRLFWSQDSGFLSQFNEKDLNKAIKYKPVSQFPQCSNDISFWLPSELSFETFSLNDVYDVVRNVGGDIVEQVLLLDKFTHPKTKKNSLTFRIIYRHMERTLTQNEANDMHATISKELIDKYNIKIR
| Type | Start | End | Length |
| CDS |
107 |
679 |
573 |
| CDS |
739 |
984 |
246 |
| CDS |
1050 |
1400 |
351 |
| CDS |
1466 |
1633 |
168 |
| intron |
680 |
738 |
59 |
| intron |
985 |
1049 |
65 |
| intron |
1401 |
1465 |
65 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001648213 |
phenylalanyl-tRNA synthetase mitochondrial [Aedes aegypti] gb|EAT44654.1| phenylalanyl-tRNA synthetase mitochondrial [Aedes aegypti] |
1e-170 |
| InterPro |
IPR004530 |
Phenylalanyl-tRNA synthetase, class IIc, mitochondrial |
|
| InterPro |
IPR005121 |
Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding |
|
| InterPro |
IPR002319 |
Phenylalanyl-tRNA synthetase |
|
| InterPro |
IPR006195 |
Aminoacyl-tRNA synthetase, class II |
|
| Gene Ontology(BP) |
GO:0006432 |
phenylalanyl-tRNA aminoacylation |
|
| Gene Ontology(BP) |
GO:0006418 |
tRNA aminoacylation for protein translation |
|
| Gene Ontology(BP) |
GO:0043039 |
tRNA aminoacylation |
|
| Gene Ontology(BP) |
GO:0008033 |
tRNA processing |
|
| Gene Ontology(CC) |
GO:0005737 |
cytoplasm |
|
| Gene Ontology(MF) |
GO:0000287 |
magnesium ion binding |
|
| Gene Ontology(MF) |
GO:0004826 |
phenylalanine-tRNA ligase activity |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0004812 |
aminoacyl-tRNA ligase activity |
|
| Gene Ontology(MF) |
GO:0000049 |
tRNA binding |
|
| Pfam |
PF01409.15 |
tRNA synthetases class II core domain (F) |
1.8e-53 |
| Pfam |
PF00152.15 |
tRNA synthetases class II (D, K and N) |
0.00055 |
| Pfam |
PF03147.9 |
Ferredoxin-fold anticodon binding domain |
3.7e-25 |
| Pfam |
PF07837.7 |
Formiminotransferase domain, N-terminal subdomain |
0.0065 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000274680 |
| S. invicta |
SI2.2.0_13398 |
| P. humanus |
PHUM227920-PA |
| D. plexippus |
DPOGS204524PA |
| H. sapiens |
ENSP00000316335 |
| H. melpomene |
HMEL008732-PA |
| A. mellifera |
GB14627-PA |
| M. musculus |
ENSMUSG00000021420 |
| C. quinquefasciatus |
CPIJ006457 |
| B. mori |
BGIBMGA004327-TA |
| A. aegypti |
AAEL003994 |
| A. gambiae |
AGAP012096 |
| T. castaneum |
TC010176 |
| P. vanderplanki |
Pv.12092 |
| N. vitripennis |
NV14641-PA |
| D. melanogaster |
FBgn0020766 |