MidgeBase gene description page [Pn.15124]
Outline
| Gene ID | Pn.15124 |
| Type | Protein coding gene |
| Scaffold | PnScaf28329 |
| Start | 296 |
| End | 1890 |
| Direction | + |
Sequence
Transcript: 819 (bp)
ATGTTCATCGATAAAGAGGCGGTTTACAGGTCGCTCGAGTGGCACAGCAGTCCCGTTGACTGGTGCGAGCCCAACTACGCCGTCACTCCCCACATCGCCGAGTTCTTCAACACATTCAGCTGCCTCATCATGGTCTTCGTGCCGCCCATCGCCATTGTTTTGTTCCGCGACTTCGCGAGGCGCGTCAACTGCGGCATTCAGGCCGTGATGGTCATGCTGATCGTGGTCGGCATCGCCTCCATGTACTTCCACGGAACGCTGTCGCTCATGGGTCAGCTGCTCGATGAGCTGTCCATCTTGTGGGTCTTCGCGATGGCCGTCTGCTTCTACTGCCCCTCAAAGATCATCCCGCGGCCGATGAACCGAGCTGTTTTCTCCCTTCTGGTGATCGCAGCAGCTGCGACGTTCACGCTGCTCTCGGTGTGGAAGCCCTTCGTGAACGCTTTCGCTCAAATGTCGCTCACCATTCCCATCATCTGGTACGTGTCGAGCGAGATCAAGCACTTCAAGCGGTCGCATCCCGAGTCGCACAGCATCGGCGTGAAGACACTTTTCATGGGGGTTGTGGCCATCACGCTGTGGTTCAACGACCGGCTTTTCTGTGACTTTTACAAGTCGTACGGCATCATTTTCCTGCACGCCGTGTGGCATGTCCTGAGCTTCACAGCCGCCTACTACGCGTGTGTTTTAACCGCGTTTTTCTACGTCAAACGCGAGAGGCCGCATGTGGCTTGTGAGATCGAGTACTGGCCCGCAAATCCTGCTGTAAAAATACTCGCGGTGCCTTATGTGAAAGTTCTTGATGCAAAGAAAGTTAAG
Protein: 273 (aa)
MFIDKEAVYRSLEWHSSPVDWCEPNYAVTPHIAEFFNTFSCLIMVFVPPIAIVLFRDFARRVNCGIQAVMVMLIVVGIASMYFHGTLSLMGQLLDELSILWVFAMAVCFYCPSKIIPRPMNRAVFSLLVIAAAATFTLLSVWKPFVNAFAQMSLTIPIIWYVSSEIKHFKRSHPESHSIGVKTLFMGVVAITLWFNDRLFCDFYKSYGIIFLHAVWHVLSFTAAYYACVLTAFFYVKRERPHVACEIEYWPANPAVKILAVPYVKVLDAKKVK
| Type | Start | End | Length |
| CDS |
296 |
353 |
58 |
| CDS |
700 |
755 |
56 |
| CDS |
838 |
1028 |
191 |
| CDS |
1152 |
1407 |
256 |
| CDS |
1630 |
1887 |
258 |
| intron |
354 |
699 |
346 |
| intron |
756 |
837 |
82 |
| intron |
1029 |
1151 |
123 |
| intron |
1408 |
1629 |
222 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ADD18339 |
alkaline ceramidase [Glossina morsitans morsitans] |
3e-55 |
| InterPro |
IPR008901 |
Ceramidase |
|
| Gene Ontology(BP) |
GO:0006672 |
ceramide metabolic process |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Gene Ontology(MF) |
GO:0016811 |
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides |
|
| Pfam |
PF05875.7 |
Ceramidase |
1.1e-51 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.03686 |