MidgeBase gene description page [Pn.14952]
Outline
| Gene ID | Pn.14952 |
| Type | Protein coding gene |
| Scaffold | PnScaf27075 |
| Start | 17574 |
| End | 18407 |
| Direction | + |
Sequence
Transcript: 591 (bp)
ATGTCTATGTGTCCTTATTACAATTCGTACGATTTAAACTCATTCTTCGAAGATGCAATGGAACCTCGCTTCGGATTAGGCCTTCTTGCAAGCGATTTTAACAATCCAACTCGCATTGTCCCGAGAGTCAATGCAAACCATCATCATTTGCCAACGGGCTATCGTCGTCCGTGGGCTATGGCGCGCCAAGCAGCGAAAGACCTAAATAAGGATCAAAAGAATCTTCATTTCACCAAAGAAGGCTTTCAAGCAAGCGTTGATGTTCATCACTTCCAACCTAATGAAATAACCGTAAAAACTGTCGACAATACAGTGGTCATCGAAGGTAGACACGAAGAACGCGATGACGGTCATGGCTCAGTTCAAAGGCATTTCGTTCGCAAATACACTTTGCCGAAAGAGTATGACATGCAGCATGTGCATTCATCGCTGTCTTCCGATGGAGTCCTCACGATCAAAGCTCCTTTGCCAGCAATCAAAGGAAACGGTGAGAAAATTGTCCCCATTGCTCATACAAATATGCCAGCGCACTTGAGCTTAAAAGATCATAGCAAGTCACAATCACCAGCAGTTAAGCCACCCGCTTCTCAA
Protein: 197 (aa)
MSMCPYYNSYDLNSFFEDAMEPRFGLGLLASDFNNPTRIVPRVNANHHHLPTGYRRPWAMARQAAKDLNKDQKNLHFTKEGFQASVDVHHFQPNEITVKTVDNTVVIEGRHEERDDGHGSVQRHFVRKYTLPKEYDMQHVHSSLSSDGVLTIKAPLPAIKGNGEKIVPIAHTNMPAHLSLKDHSKSQSPAVKPPASQ
| Type | Start | End | Length |
| CDS |
17574 |
17628 |
55 |
| CDS |
17718 |
17923 |
206 |
| CDS |
18075 |
18404 |
330 |
| intron |
17629 |
17717 |
89 |
| intron |
17924 |
18074 |
151 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ADM13384 |
small heat shock protein 20 [Polypedilum vanderplanki] |
4e-46 |
| InterPro |
IPR001436 |
Alpha crystallin/Heat shock protein |
|
| InterPro |
IPR002068 |
Heat shock protein Hsp20 |
|
| InterPro |
IPR008978 |
HSP20-like chaperone |
|
| Pfam |
PF07873.6 |
YabP family |
0.11 |
| Pfam |
PF00011.16 |
Hsp20/alpha crystallin family |
1.8e-24 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.01517 |