MidgeBase gene description page [Pn.14943]
Outline
| Gene ID | Pn.14943 |
| Type | Protein coding gene |
| Scaffold | PnScaf27053 |
| Start | 13935 |
| End | 16321 |
| Direction | - |
Sequence
Transcript: 1383 (bp)
ATGAGACAGCGTGAGAGCAGCGATAAACGCTATCTCTTCACTCCCGACCAGAACTGGGTCATTCTCAGTCATCTGCACACGTCGATTCACCAAAAGGCGTTCTACGGCAGCGCACTTGGCTTCCAGTCCGCGCCGTCCGTGAAGCGAATCGTCAACTTTCTCACAACGGCACTCGCCGGATACACCAAGTGGCACTACTCGGATAAGCACAAGTCCATCCGCCTCCTCGACTTTTCCGTCTCGACCGGCAAATATTTCCTCAAGCCTCAGCGCCGCGCCCATAAATTCATCGCGACTTCGCATAAGGGCGATGTCGACTTCTGCAAGAGTTTTTGGTTTATGCCCGAGACGCCGGCAATGCATACTCTGCCGAACGCATTGAGCGAGAGCATGGACGTCAACAAAACTTTCAAAATACCAGCGGAACCTCTAAAGACGTTCAGCGAAAAGCTACAGAGGCACATTGACATTCCTCTTCCGCACAGTCACGTCGGAACGAAACCTGTCTCGTGTCGATTGCTTAGCGCGCGAAAGCGCGACGGAATGATGAGCAAAAAGTCGTCGGCGAAAAGTATGCCAAGGTCGCCGTGGCTGCTCTTTCACGTGCACGGCGGAGGTTGGGCGGCGCAGACGTCAAAGTCGCACGAGGTGTACCTGCGACAATGGGCCTCCTACCTCGACTGTCCGATCCTCTCGATCGACTACCAGCTGGCCCCCAAAGCGCCTTTCCCGCGCGGTCTCGAAGACTGCTACTACGCCTACTGCTGGGCGCTCAACAACCTCGACAGCCTCGGCACCACCGGTGAGAGGATCGTGTTTGCTGGTGACAGCGCCGGCGCGAATCTCAACTCCGCGCTCATCGTGAAGTGCATCGAGACCGGCATCCGCGTGCCAGACGGCCTACTCAACATCTACGGTATCTACAACCTCGACTTTCTCATCTCGCCGTCGGTGTGTCTCTCGCTCACCGACCCCATGCTGCCCTTCGGACTCACGTCCATTCTGCTCAAGTCCTACGGCATGGACCCGAAGGCGACCGGCGACATGAAGACTGACGCGAACGGGAATCTCATCGAGGGAGCTCAGCGCGGCACCTACGACTTTAAGTTCCACGAAAGCCACCTGCTCTCACCGTACAAGGCGGCCGACGAAATTCTCAGACAGTTTCCGCCGACGCGCTTCCTCTCCACCGTTCTCGATCCTCTGCTCGACGACAACATCGAGTTTGGCAAGCGATTGAGGAGCCTCGGAGTTATTGTCAACGTTGACGTGCTCAATGGTCTCTACCACGGCTTTCTTTACTTCATTAAGCTGTCAAAAGAATGCCGCGACGGATCGCTGATGTGTGCAGTGCGCATCAAAGAGCTGTTCGAAAACATCGTG
Protein: 461 (aa)
MRQRESSDKRYLFTPDQNWVILSHLHTSIHQKAFYGSALGFQSAPSVKRIVNFLTTALAGYTKWHYSDKHKSIRLLDFSVSTGKYFLKPQRRAHKFIATSHKGDVDFCKSFWFMPETPAMHTLPNALSESMDVNKTFKIPAEPLKTFSEKLQRHIDIPLPHSHVGTKPVSCRLLSARKRDGMMSKKSSAKSMPRSPWLLFHVHGGGWAAQTSKSHEVYLRQWASYLDCPILSIDYQLAPKAPFPRGLEDCYYAYCWALNNLDSLGTTGERIVFAGDSAGANLNSALIVKCIETGIRVPDGLLNIYGIYNLDFLISPSVCLSLTDPMLPFGLTSILLKSYGMDPKATGDMKTDANGNLIEGAQRGTYDFKFHESHLLSPYKAADEILRQFPPTRFLSTVLDPLLDDNIEFGKRLRSLGVIVNVDVLNGLYHGFLYFIKLSKECRDGSLMCAVRIKELFENIV
| Type | Start | End | Length |
| CDS |
13938 |
14009 |
72 |
| CDS |
14295 |
15059 |
765 |
| CDS |
15457 |
15675 |
219 |
| CDS |
15995 |
16321 |
327 |
| intron |
14010 |
14294 |
285 |
| intron |
15060 |
15456 |
397 |
| intron |
15676 |
15994 |
319 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001974881 |
GG22019 [Drosophila erecta] gb|EDV55281.1| GG22019 [Drosophila erecta] |
2e-83 |
| InterPro |
IPR010468 |
Hormone-sensitive lipase, N-terminal |
|
| InterPro |
IPR013094 |
Alpha/beta hydrolase fold-3 |
|
| InterPro |
IPR002168 |
Lipase, GDXG, active site |
|
| Gene Ontology(BP) |
GO:0016042 |
lipid catabolic process |
|
| Gene Ontology(BP) |
GO:0008203 |
cholesterol metabolic process |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0016787 |
hydrolase activity |
|
| Gene Ontology(MF) |
GO:0016298 |
lipase activity |
|
| Pfam |
PF06350.7 |
Hormone-sensitive lipase (HSL) N-terminus |
2.6e-40 |
| Pfam |
PF10340.4 |
Protein of unknown function (DUF2424) |
5.7e-05 |
| Pfam |
PF07859.8 |
alpha/beta hydrolase fold |
3.3e-38 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.16773 |