MidgeBase gene description page [Pn.14929]
Outline
| Gene ID | Pn.14929 |
| Type | Protein coding gene |
| Scaffold | PnScaf27014 |
| Start | 732 |
| End | 8379 |
| Direction | - |
Sequence
Transcript: 3216 (bp)
ATGATAATTTGCATATCGGGATTTGTGATAGGCGAGAGTTTGCCACAAACAACAGACCGTCCACTGTGCTCCACCGCTGGTAGCTTCAACACATCAACCGAACAATATTCGTTCGAAAACCCATCCTCATACAGTTCAGAACAACACCATCACCATCATCATCATGTAATCGACAGTCATTTGAGTTATGATATCGAGGATGACATCATTAATATGGACGATGAGAGTAATCACAGCAGCTACGTGTATTTACAATCCCAACAGCACTACACACCACCGCCCGTAGAATTTCAAGAGGGCTCCACGCCACAACACCAGCCGACGCTTATTAAGAAAGGCTCCATTATGAGAAATAATCCCGAATTAATGAAACGTAATCGTCAAAATAATTCAAGTTATGAGCTGTCACAAGATTTGTTGGATAAGCAAATTGAATTGCTGGAAAGAAAGTACGGTGGAATTAGAGCGCGAAAAGCAGCGGTATGCATTCAACGAGCCTTCCGTCATTACAAGATGGTTAAGAAATTCGCCTCAATCACGGCCATGGCAAAAGCAGACAAACGAATCTCAAATCGATGTAGCATGCAGTCATTGATTAGTGTGGGAGAGCCGGAGTCAAACGAGATCGGAATTAATCAGCCAGGACAGAAAGTTTGTGCAATAATATCAGCAACTCCTCCCGGTCAACCGCGCACATCTGCTAATCGAGCCGTATCGTTTCGCGAGCGACGAAATGTGCTCGATTCGAATTTCAATCAAGTTGCCCCCGCGGTTAAAAGGCAGCCACTTTCACAAAGCAATTTCCAGCAACATCCGTCATCTCAGCTTCAGCAACAGCAGCAGCAGCAACAGCACGCATACGTTAATCTCCTGCACTCACAAGATCAGCAGTACAATAATTATCAAAATTATCACCACAGTCACAACACCAGCGGGGGCGGCGGCGTCGGCAGTAGCAGCAACAACAACAACTACCCTATTGCGAGCAACAACAGCTCGTTCAACAGTTCATCGCTGCATCAGTATGAGCTCAATCTCAGCTCCTCCTCGAGCTCGGCCAACAACACCACAATGAACTCTTCCTGGAACTCCTATAGTAATAGTCCGAACGCGTCACTCATTGCTCAACAACAACAATGTCAACAGCAACAACAACAGTACTACATTCGACCGAGAACATCGAGTATTTCTAGCAAAAAGGTACCGCCAGAAGTCCCCAAACGCACGAGCAGCATTCAGCCTCCTCCGCAGCTAACGCCACCTCCGCAAAAATATCCTCAATCTCATGTACCGCAGCAGCCATTAGCTAGGGCTCATCACCATCACCACCACCATCATCATCACCACGCTCACTCGCAGCAACCACTGCCGATGAAGGGAGCAGCTGTAGCAGGCGCAGTGGTCTGCAGCCAACAATACTACAAGACCGAAAACGGAAATCACTCCTCGCCCGATTCGCTATCGCTCTCCTCCAACTCTCCGATTCCTCACCATCACTGGACGACTGTTCACCAGACATCCATTGAGCAACAGACACACATATTACACCAACAGTATATTATGGAGCAGAAGCACATTCAACAGCAATTGATACAACAGCAAAACGAAATTCAACTCCAGGCGAAGCTGTCGGAAACTATTCGCAAGCGTCAATATCGAATTGGCTTGAACTTATTCAACAAGAAACCTGAGAAAGGCATTACATACCTTATGCACAAAAACTTTCTCGAGAACTCGCCACACGCCGTGTCGAAGTTCTTGATATCGAGAAAAGGTCTATCGCGACAGATGATTGGCGAGTATTTGGGTAATTTGCAGCAGGCATTTAACATGGCCGTTTTGGAGTATTTTGCCGAGGAAATGGACTTTTCTGGCTTGGCCGTCGACGTTGCACTGAGAAAGTTTCAAGGGTACTTTAGGATGCCGGGCGAGGCACAAAAAATTGAGCGACTCATGGAGGTTTTCTCTCATCGCTACGCTGTCTGCAATCCGGATGTTGTCGGAAAGCTGCGGTCACCCGATACGATTTTTGTTTTGGCATTTGCGATCATCATGTTGAACACAGATCTTCACACGCCAAACATTAAAGCCGATCGCCGCATGAAGTGTGAGGATTTCATTAAGAATCTTCGCGGAATAGACGACTGCATGGATATCGACAAGAATCTTTTGATTGGCATCTACGAGCGAATTAAGGAGACTGAATTTAAGACGGCATCGGATCACGTTACTCAAGTCATGAAAGTGCAGAAAACAATTGTCGGCAAGAAATTGAATTTGGCAGTTCCACATCGTCGGCTGGTTTGCTATTGTCGATTGTACGAAATTGACATTAACAAGAAGGAACGACAAGGTCTGCATCAGCGCGAGGTCTTTCTCTTCAACGACCTGCTCGTAGTGACAAAGATTTTCACCAAGAAGAAAGCGTCCGTGACGTACACCTTCAGGAATTCTTTCTCGCTCGTCGGATTGGTCGTTACTCTGTTAGATGTGCCAAATTATCCTTTTTGTATAAGACTATCACAAAAAGTAGATGGAAAAATTCTTGCAACATTTAATGCCCGCAATGAGCATGACCGATGCAAATTTGCGGATGATTTGCGCGAATCGATTGCCGAAATGGACGAAATGGAATCCATCCGCATTGAAATGGAACTTGAGAGGCAAATGAAGGCAACTCGGTGCGTTGGAAATGGCATGAATAACAACGTTGAAAATCGCGACAGCGGTGTTGGTGATATTGAGGCGCTGGAGTTTACAACTTCCAAGTCATTTGAGTCGAAGTCAACATCAAACAATGATATTCAAAATGGACAATTGAAGCGTGGCGGTGCGCTAAGCAATTCTCTGCTCGATATTCATGATCAATTTGGAAACGAATGCCGCCAAAGGCGAGGCAGTGTTGGCAGCCTCGATAGCGGAATGTCAATTTCTTTCCAATCAACTTCAACCAATAATAACAATAACAATGCTTCCAACGGAAAAAGCAATGCTGAAAGCTCAGCATCGTCGGCTTATGCATCACCGGCTAGTGGTGCCATCCAACGCCAGCCAATACAGCAGCATGCAAGCAGTAATGGTCATGTGATGATTCCACCATTGCTTCCAAACAGTGCGTTATATCAATACAATAATGAACAGATGATTCACATGCACGAACTTTACGAAGAACACCATCGCACGCATGCCGACGCGACTGGTCGTTCGACGGACGTT
Protein: 1072 (aa)
MIICISGFVIGESLPQTTDRPLCSTAGSFNTSTEQYSFENPSSYSSEQHHHHHHHVIDSHLSYDIEDDIINMDDESNHSSYVYLQSQQHYTPPPVEFQEGSTPQHQPTLIKKGSIMRNNPELMKRNRQNNSSYELSQDLLDKQIELLERKYGGIRARKAAVCIQRAFRHYKMVKKFASITAMAKADKRISNRCSMQSLISVGEPESNEIGINQPGQKVCAIISATPPGQPRTSANRAVSFRERRNVLDSNFNQVAPAVKRQPLSQSNFQQHPSSQLQQQQQQQQHAYVNLLHSQDQQYNNYQNYHHSHNTSGGGGVGSSSNNNNYPIASNNSSFNSSSLHQYELNLSSSSSSANNTTMNSSWNSYSNSPNASLIAQQQQCQQQQQQYYIRPRTSSISSKKVPPEVPKRTSSIQPPPQLTPPPQKYPQSHVPQQPLARAHHHHHHHHHHHAHSQQPLPMKGAAVAGAVVCSQQYYKTENGNHSSPDSLSLSSNSPIPHHHWTTVHQTSIEQQTHILHQQYIMEQKHIQQQLIQQQNEIQLQAKLSETIRKRQYRIGLNLFNKKPEKGITYLMHKNFLENSPHAVSKFLISRKGLSRQMIGEYLGNLQQAFNMAVLEYFAEEMDFSGLAVDVALRKFQGYFRMPGEAQKIERLMEVFSHRYAVCNPDVVGKLRSPDTIFVLAFAIIMLNTDLHTPNIKADRRMKCEDFIKNLRGIDDCMDIDKNLLIGIYERIKETEFKTASDHVTQVMKVQKTIVGKKLNLAVPHRRLVCYCRLYEIDINKKERQGLHQREVFLFNDLLVVTKIFTKKKASVTYTFRNSFSLVGLVVTLLDVPNYPFCIRLSQKVDGKILATFNARNEHDRCKFADDLRESIAEMDEMESIRIEMELERQMKATRCVGNGMNNNVENRDSGVGDIEALEFTTSKSFESKSTSNNDIQNGQLKRGGALSNSLLDIHDQFGNECRQRRGSVGSLDSGMSISFQSTSTNNNNNNASNGKSNAESSASSAYASPASGAIQRQPIQQHASSNGHVMIPPLLPNSALYQYNNEQMIHMHELYEEHHRTHADATGRSTDV
| Type | Start | End | Length |
| CDS |
735 |
1081 |
347 |
| CDS |
1179 |
1550 |
372 |
| CDS |
1633 |
2104 |
472 |
| CDS |
2177 |
3539 |
1363 |
| CDS |
3610 |
3879 |
270 |
| CDS |
3973 |
4326 |
354 |
| CDS |
8342 |
8379 |
38 |
| intron |
1082 |
1178 |
97 |
| intron |
1551 |
1632 |
82 |
| intron |
2105 |
2176 |
72 |
| intron |
3540 |
3609 |
70 |
| intron |
3880 |
3972 |
93 |
| intron |
4327 |
8341 |
4015 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_003488197 |
PREDICTED: hypothetical protein LOC100745091 isoform 2 [Bombus impatiens] |
0.0 |
| InterPro |
IPR023394 |
SEC7-like, alpha orthogonal bundle |
|
| InterPro |
IPR011993 |
Pleckstrin homology-like domain |
|
| InterPro |
IPR000904 |
SEC7-like |
|
| InterPro |
IPR000048 |
IQ motif, EF-hand binding site |
|
| Gene Ontology(BP) |
GO:0032012 |
regulation of ARF protein signal transduction |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0005086 |
ARF guanyl-nucleotide exchange factor activity |
|
| Pfam |
PF00612.22 |
IQ calmodulin-binding motif |
0.0071 |
| Pfam |
PF01369.15 |
Sec7 domain |
3.7e-58 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. mellifera |
GB14817-PA |
| H. sapiens |
ENSP00000461496 |
| H. sapiens |
ENSP00000437554 |
| D. melanogaster |
FBgn0026179 |
| H. melpomene |
HMEL016325-PA |
| N. vitripennis |
NV12173-PA |
| H. sapiens |
ENSP00000461043 |
| H. sapiens |
ENSP00000372292 |
| H. sapiens |
ENSP00000397811 |
| P. humanus |
PHUM029790-PA |
| T. castaneum |
TC005167 |
| H. sapiens |
ENSP00000456180 |
| H. sapiens |
ENSP00000456630 |
| H. sapiens |
ENSP00000364517 |
| H. sapiens |
ENSP00000273221 |
| P. vanderplanki |
Pv.08481 |
| A. aegypti |
AAEL000906 |
| S. invicta |
SI2.2.0_01044 |
| M. musculus |
ENSMUSG00000041115 |
| H. sapiens |
ENSP00000315662 |
| H. sapiens |
ENSP00000379712 |
| P. vanderplanki |
Pv.12970 |
| C. quinquefasciatus |
CPIJ002812 |
| H. sapiens |
ENSP00000402299 |
| A. gambiae |
AGAP011421 |
| B. mori |
BGIBMGA004600-TA |
| H. sapiens |
ENSP00000364514 |
| D. plexippus |
DPOGS216191PA |