MidgeBase gene description page [Pn.14927]
Outline
| Gene ID | Pn.14927 |
| Type | Protein coding gene |
| Scaffold | PnScaf26964 |
| Start | 33 |
| End | 1590 |
| Direction | + |
Sequence
Transcript: 1233 (bp)
ATGCCGTGCCAGCATGGCGCCACATGTCACAACACGTGGAACGACTTCGTGTGCGAGTGCACAAAGGGCTACAAGGGAAAGTACTGCCAGGACATACAGTTCTGCGAGCTGCACAAGTGCCCGGGACAGGCGCACTGCAAGAACCTCGACGACGGCTATGACTGCATCACGAACATCACGTTCCGAGGCACCGAAGACAGTCCGCTCCAGTACTTCTTCGTTCCGCATGGCTCCGATGACGTGGAGAAGACGAAACCATTTGAGAAAGTCATCGAGATCGCGTATAGAACAAAAATTGGCGGCACGCTGCTGTATGTCGAGGACGAGCAAGACATGTACTTCGAAATTGCCTCATTCAAGGACCAACTGACCGTTCAGTGGCGACTCTCGACTGAGCTCGCAAATGTCCATCGGTTTACGCGCGACAACGCTCCGATCTACGATTGGAATTATCTGTACTTGCGCGTGGCTGACAACAAACTTGAGGCCGGCTGGAAGGGCTGGGAAACGCAGGACATTCAGCCGCCGCTCTCGACGCACATCGACATGAAGGCGTTCGAGTATCTGTTCTCGGGCAAGTACCCAATCTCACTCGGCGGATCAAATCCGACGCGATCGAACGCAATCTACAAGGCGCTGAATCTGAAGGGATCGACTTTCAAGGGCTGCATCGGTGAGACGCGCATCGGTGAGATGTTACTACCGTTTTTCCCACATTCTGAGATCTACACCGATAATCTTACGCCACGCGCTCACTACAACCTCAATACGAGCAGAATCGAGGAGGGATGCACTTTGTGTTTCGAGCAGGATTGCCAGAATGGCGGCGTCTGCAAAAATCCCAAAGAAAACTACTCATGCAAGTGTCCAGTCGGTTACGAAAAGGACGACTGCTCGCAAAACATCGACGAGTGTCTTCAGTCGGAGTGCGCAAACAACTCTACGTGCGTCGACGGCATCGGAAACTATACTTGCATGTGCCTTCTCGGCTACGAGGGACGCTTTTGTGAAGACGAAATCAACGAGTGTGAATCTCAGCCGTGTCACAACGGCGGCAATTGTACCGACTTGATCGCAGACTTTAAGTGCGATTGCAGCGAGGAATATGCGGGCAAGCAGTGCGATGTATTGCGTCTTGTTACTTGCGAGAACACGCCCTGCAGACTCGGATCGACCTGTCAAGATGGTCACAGTAAGTTAATTTTTCTACGTCAAATGCTGAAACTTTCGTCG
Protein: 411 (aa)
MPCQHGATCHNTWNDFVCECTKGYKGKYCQDIQFCELHKCPGQAHCKNLDDGYDCITNITFRGTEDSPLQYFFVPHGSDDVEKTKPFEKVIEIAYRTKIGGTLLYVEDEQDMYFEIASFKDQLTVQWRLSTELANVHRFTRDNAPIYDWNYLYLRVADNKLEAGWKGWETQDIQPPLSTHIDMKAFEYLFSGKYPISLGGSNPTRSNAIYKALNLKGSTFKGCIGETRIGEMLLPFFPHSEIYTDNLTPRAHYNLNTSRIEEGCTLCFEQDCQNGGVCKNPKENYSCKCPVGYEKDDCSQNIDECLQSECANNSTCVDGIGNYTCMCLLGYEGRFCEDEINECESQPCHNGGNCTDLIADFKCDCSEEYAGKQCDVLRLVTCENTPCRLGSTCQDGHSKLIFLRQMLKLSS
| Type | Start | End | Length |
| CDS |
33 |
896 |
864 |
| CDS |
1149 |
1262 |
114 |
| CDS |
1333 |
1587 |
255 |
| intron |
897 |
1148 |
252 |
| intron |
1263 |
1332 |
70 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001863841 |
crumbs [Culex quinquefasciatus] gb|EDS39192.1| crumbs [Culex quinquefasciatus] |
1e-130 |
| InterPro |
IPR001881 |
EGF-like calcium-binding |
|
| InterPro |
IPR000742 |
Epidermal growth factor-like domain |
|
| InterPro |
IPR013320 |
Concanavalin A-like lectin/glucanase, subgroup |
|
| InterPro |
IPR013032 |
EGF-like, conserved site |
|
| InterPro |
IPR000152 |
EGF-type aspartate/asparagine hydroxylation site |
|
| InterPro |
IPR018097 |
EGF-like calcium-binding, conserved site |
|
| InterPro |
IPR006209 |
EGF-like domain |
|
| InterPro |
IPR006210 |
Epidermal growth factor-like |
|
| InterPro |
IPR008985 |
Concanavalin A-like lectin/glucanase |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0005509 |
calcium ion binding |
|
| Pfam |
PF02210.19 |
Laminin G domain |
0.00037 |
| Pfam |
PF12946.2 |
MSP1 EGF domain 1 |
0.0024 |
| Pfam |
PF07974.8 |
EGF-like domain |
0.0097 |
| Pfam |
PF00008.22 |
EGF-like domain |
4.7e-21 |
| Pfam |
PF12947.2 |
EGF domain |
0.00099 |
| Pfam |
PF12661.2 |
Human growth factor-like EGF |
0.0026 |
| Pfam |
PF07645.10 |
Calcium-binding EGF domain |
2e-10 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| S. invicta |
SI2.2.0_10585 |
| H. sapiens |
ENSP00000439579 |
| H. sapiens |
ENSP00000433932 |
| H. sapiens |
ENSP00000362734 |
| H. sapiens |
ENSP00000435279 |
| B. mori |
BGIBMGA007609-TA |
| C. quinquefasciatus |
CPIJ012979 |
| N. vitripennis |
NV12437-PA |
| H. sapiens |
ENSP00000356370 |
| A. aegypti |
AAEL009102 |
| H. sapiens |
ENSP00000356367 |
| D. plexippus |
DPOGS215296PA |
| H. sapiens |
ENSP00000438786 |
| H. sapiens |
ENSP00000362732 |
| H. melpomene |
HMEL011856-PA |
| A. mellifera |
GB14525-PA |
| M. musculus |
ENSMUSG00000035403 |
| H. sapiens |
ENSP00000356369 |
| H. melpomene |
HMEL008650-PA |
| H. sapiens |
ENSP00000444556 |
| T. castaneum |
TC004424 |
| M. musculus |
ENSMUSG00000063681 |
| H. sapiens |
ENSP00000353092 |
| P. humanus |
PHUM489120-PA |
| P. vanderplanki |
Pv.01543 |
| S. invicta |
SI2.2.0_05950 |
| A. aegypti |
AAEL009093 |
| A. gambiae |
AGAP003873 |
| D. melanogaster |
FBgn0259685 |
| B. mori |
BGIBMGA007607-TA |
| H. sapiens |
ENSP00000438091 |