MidgeBase gene description page [Pn.14904]

Outline

Link to gbrowse

Gene ID Pn.14904
Type Protein coding gene
Scaffold PnScaf26799
Start 6305
End 7937
Direction +

Sequence

Transcript: 453 (bp)

 ATGTCAACGCCAGCGAGGAGACGATTAATGCGCGATTTCAAAAGGCTTCAAGAAGATCCACCAACCGGCGTTTCTGGCGCTCCGACCGATAACAACATTATGATTTGGAATGCTGTGATTTTCGGTCCTCATGACACACCATTCGAAGACGGAACTTTTAAATTGACGATAGAATTCACTGAAGAGTATCCGAATAAGCCGCCGACAGTTCGTTTTGTGTCGAAGATGTTTCATCCAAATGTTTATGCGGATGGTGGAATCTGCTTGGACATCTTACAGAATCGATGGAGTCCAACATACGATGTATCTGCCATATTAACATCTATACAATCTCTTCTGAGTGATCCAAATCCCAACTCACCTGCAAATGCAATGGCAGCACAGTTGTATAAAGAAAATCGTCGGGAGTACGAAAAACGGGTTAAGGCATGTGTGGAACAAAGCTTCATCGAT 

Protein: 151 (aa)

 MSTPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANAMAAQLYKENRREYEKRVKACVEQSFID 
Type Start End Length
CDS 6305 6348 44
CDS 7455 7740 286
CDS 7812 7934 123
intron 6349 7454 1106
intron 7741 7811 71

Auto annotation result

Program/Analysis Accession Description Score/Expectation
BLASTP/NCBI-nr XP_001654707 ubiquitin-conjugating enzyme rad6 [Aedes aegypti] ref|XP_310416.7| AGAP003857-PA [Anopheles gambiae str. PEST] gb|EAT46718.1| ubiquitin-conjugating enzyme rad6 [Aedes aegypti] gb|EAA06004.5| AGAP003857-PA [Anopheles gambiae str. PEST] 6e-85
InterPro IPR016135 Ubiquitin-conjugating enzyme/RWD-like
InterPro IPR000608 Ubiquitin-conjugating enzyme, E2
InterPro IPR023313 Ubiquitin-conjugating enzyme, active site
Gene Ontology(MF) GO:0016881 acid-amino acid ligase activity
Pfam PF05773.17 RWD domain 0.0017
Pfam PF05743.8 UEV domain 0.059
Pfam PF00179.21 Ubiquitin-conjugating enzyme 1.5e-53

Expression level (RPKM)

Paralog/Ortholog genes

Paralogous genes

Gene ID

Orthologous genes

Species Gene ID
M. musculus ENSMUSG00000016308
D. plexippus DPOGS212485PA
N. vitripennis NV15062-PA
P. vanderplanki Pv.07618
T. castaneum TC011188
H. sapiens ENSP00000360613
B. mori BGIBMGA010222-TA
S. invicta SI2.2.0_05561
C. quinquefasciatus CPIJ004272
A. mellifera GB11856-PA
A. aegypti AAEL002118
H. melpomene HMEL009507-PA
A. gambiae AGAP003857
P. humanus PHUM599030-PA
D. melanogaster FBgn0004436