MidgeBase gene description page [Pn.14904]
Outline
Gene ID | Pn.14904 |
Type | Protein coding gene |
Scaffold | PnScaf26799 |
Start | 6305 |
End | 7937 |
Direction | + |
Sequence
Transcript: 453 (bp)
ATGTCAACGCCAGCGAGGAGACGATTAATGCGCGATTTCAAAAGGCTTCAAGAAGATCCACCAACCGGCGTTTCTGGCGCTCCGACCGATAACAACATTATGATTTGGAATGCTGTGATTTTCGGTCCTCATGACACACCATTCGAAGACGGAACTTTTAAATTGACGATAGAATTCACTGAAGAGTATCCGAATAAGCCGCCGACAGTTCGTTTTGTGTCGAAGATGTTTCATCCAAATGTTTATGCGGATGGTGGAATCTGCTTGGACATCTTACAGAATCGATGGAGTCCAACATACGATGTATCTGCCATATTAACATCTATACAATCTCTTCTGAGTGATCCAAATCCCAACTCACCTGCAAATGCAATGGCAGCACAGTTGTATAAAGAAAATCGTCGGGAGTACGAAAAACGGGTTAAGGCATGTGTGGAACAAAGCTTCATCGAT
Protein: 151 (aa)
MSTPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANAMAAQLYKENRREYEKRVKACVEQSFID
Type | Start | End | Length |
CDS |
6305 |
6348 |
44 |
CDS |
7455 |
7740 |
286 |
CDS |
7812 |
7934 |
123 |
intron |
6349 |
7454 |
1106 |
intron |
7741 |
7811 |
71 |
Auto annotation result
Program/Analysis | Accession | Description | Score/Expectation |
BLASTP/NCBI-nr |
XP_001654707 |
ubiquitin-conjugating enzyme rad6 [Aedes aegypti] ref|XP_310416.7| AGAP003857-PA [Anopheles gambiae str. PEST] gb|EAT46718.1| ubiquitin-conjugating enzyme rad6 [Aedes aegypti] gb|EAA06004.5| AGAP003857-PA [Anopheles gambiae str. PEST] |
6e-85 |
InterPro |
IPR016135 |
Ubiquitin-conjugating enzyme/RWD-like |
|
InterPro |
IPR000608 |
Ubiquitin-conjugating enzyme, E2 |
|
InterPro |
IPR023313 |
Ubiquitin-conjugating enzyme, active site |
|
Gene Ontology(MF) |
GO:0016881 |
acid-amino acid ligase activity |
|
Pfam |
PF05773.17 |
RWD domain |
0.0017 |
Pfam |
PF05743.8 |
UEV domain |
0.059 |
Pfam |
PF00179.21 |
Ubiquitin-conjugating enzyme |
1.5e-53 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
Species |
Gene ID |
M. musculus |
ENSMUSG00000016308 |
D. plexippus |
DPOGS212485PA |
N. vitripennis |
NV15062-PA |
P. vanderplanki |
Pv.07618 |
T. castaneum |
TC011188 |
H. sapiens |
ENSP00000360613 |
B. mori |
BGIBMGA010222-TA |
S. invicta |
SI2.2.0_05561 |
C. quinquefasciatus |
CPIJ004272 |
A. mellifera |
GB11856-PA |
A. aegypti |
AAEL002118 |
H. melpomene |
HMEL009507-PA |
A. gambiae |
AGAP003857 |
P. humanus |
PHUM599030-PA |
D. melanogaster |
FBgn0004436 |