MidgeBase gene description page [Pn.14855]
Outline
| Gene ID | Pn.14855 |
| Type | Protein coding gene |
| Scaffold | PnScaf26431 |
| Start | 4276 |
| End | 6647 |
| Direction | - |
Sequence
Transcript: 1605 (bp)
ATGAGAATCACGAGCCACACACTGCACTCGTCCGGCAACGAGAAGGAGATCTTCGAGACGTACCGCCAAGAGTCCGAGTGGACGAAGAGCGTTCCCTCCATCCCGGACTTTTACGCTAACCGCGAGATTTTCGTGACGGGCGGCAGCGGCTTTATCGGGAAGGTTCTAATCGAAAAGCTGTTGAGGTCATGCAGTGACCTCAAGACAATTTACATACTGCTGAGGCCGAAGAAAGGCAAGTCTGTCGAGGAGCGACTGAGGCACTTGATTGAGCTGCCGCTGTTCGAGCCGATGAAGAAATTCCGGCCGGAGCTATTCGGAAAGCTGGTGCCGATTGCGGGCGATGTGACTGAAATCAATTTGGGTATTTCCGACAGTGACGCAGTCCGCATGAAAAATGTCTCGATAATTTTTCACTCCGCCGCGAGTGTTCGATTTGACGACTCACTGCGCTACGCAGTGTTCATGAACACGCGCGGCACTCGCGAGATCATGAGGTTCGCGAAATCATTGCGGAACATCAAAGTTTGCATGCACGTGTCGACGACCTACAGCCATCCCGAGCTGAAGACGGTCGGCGAGGTCATCCACGAGCCGTACGTCGACTGGAAGAAGACCATCGAGATTTGCGAGCAGTTCGACGACGACACGATGCAGGTCTTCACGCGTCAGTACACGGGATTCATGCCAAACACCTACACGTTCACGAAGGCGCTCGCCGAGCAGATTGTGGCCGACGAGAGGGATGAGTTGCCGCTGACGCTCTTTCGTCCCTCCATCGTCATCTCGTCGATGAAAGAGCCGTTTCAGGGATGGATCGACAACTTTAACGGACCGGTTGGGATGCTGGTCGGATCGGGCTTGGGAATCACGCGAACACTGTACTGCGACCCCGACAACATCGCCGACTTCACGCCTGTCGACGTTTGTGCCAAAGCGATGATTGTCGCAGCATGGAAGCGCGCTCACGAACCGAAAGGAACATTGCCAATCATTAATTGCTGCCTCTCAAATTACCGCAACGCAACGATGGAGCAAATCGTTGACCTCGGAAAAGGCCTGCAGGACACTGCGCCGATTAATAAAATGTTATGGGCACCCGGCGGCTCAATTACGAGATGCCGCTTCAACAACTACATCAAGGTCATCTTTCTGCAGCTCATACCGGCTCTGATTATCGATCAGATCTTGAAGTTCGCTGGTCACAAGCCATTCCTTGCGAAGCTGCAACGAAAGGTCTACGAGGCGAACTTGGCGCTGCACTACTTCATTCTCAACAACTGGCACTTTAAGAACGACAACTTCATGGACCTCTGCTCGCACCTGAAGCTGCAGGACATGAAGTCCTTCAACTTCCACGACTTCCTCGAGTTCGACTTGGTGCTTTACTTCACGTACGCCGTCATCGGCGGCAGGAGGTATCTGCTTGGTGAGAAGGACGAGGATTTGCCGAAGGCCAGAGCAAAATACTTTAAAATGAAGATTCTGGACAAAGTTGTGAAGACGATTCTCGCCGTGACCGTTTTCTGGCTGGTTTTTATCAAATACGACGTTTTCGGGTTGAGCAAGCTTTACTGCACTTTGGTCAGACGCTATCACGATTAT
Protein: 535 (aa)
MRITSHTLHSSGNEKEIFETYRQESEWTKSVPSIPDFYANREIFVTGGSGFIGKVLIEKLLRSCSDLKTIYILLRPKKGKSVEERLRHLIELPLFEPMKKFRPELFGKLVPIAGDVTEINLGISDSDAVRMKNVSIIFHSAASVRFDDSLRYAVFMNTRGTREIMRFAKSLRNIKVCMHVSTTYSHPELKTVGEVIHEPYVDWKKTIEICEQFDDDTMQVFTRQYTGFMPNTYTFTKALAEQIVADERDELPLTLFRPSIVISSMKEPFQGWIDNFNGPVGMLVGSGLGITRTLYCDPDNIADFTPVDVCAKAMIVAAWKRAHEPKGTLPIINCCLSNYRNATMEQIVDLGKGLQDTAPINKMLWAPGGSITRCRFNNYIKVIFLQLIPALIIDQILKFAGHKPFLAKLQRKVYEANLALHYFILNNWHFKNDNFMDLCSHLKLQDMKSFNFHDFLEFDLVLYFTYAVIGGRRYLLGEKDEDLPKARAKYFKMKILDKVVKTILAVTVFWLVFIKYDVFGLSKLYCTLVRRYHDY
| Type | Start | End | Length |
| CDS |
4279 |
4669 |
391 |
| CDS |
4736 |
4844 |
109 |
| CDS |
5103 |
5230 |
128 |
| CDS |
5585 |
5766 |
182 |
| CDS |
5853 |
6647 |
795 |
| intron |
4670 |
4735 |
66 |
| intron |
4845 |
5102 |
258 |
| intron |
5231 |
5584 |
354 |
| intron |
5767 |
5852 |
86 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFR28489 |
hypothetical protein AND_03503 [Anopheles darlingi] |
1e-170 |
| InterPro |
IPR004262 |
Male sterility |
|
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR013120 |
Male sterility, NAD-binding |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(MF) |
GO:0016620 |
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
5.8e-06 |
| Pfam |
PF01073.14 |
3-beta hydroxysteroid dehydrogenase/isomerase family |
8.2e-06 |
| Pfam |
PF13460.1 |
NADH(P)-binding |
0.18 |
| Pfam |
PF03015.14 |
Male sterility protein |
2.4e-19 |
| Pfam |
PF02719.10 |
Polysaccharide biosynthesis protein |
0.00019 |
| Pfam |
PF07993.7 |
Male sterility protein |
3.1e-67 |
| Pfam |
PF01118.19 |
Semialdehyde dehydrogenase, NAD binding domain |
0.046 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC006096 |
| A. aegypti |
AAEL002533 |
| A. mellifera |
GB18415-PA |
| C. quinquefasciatus |
CPIJ012333 |
| A. gambiae |
AGAP001084 |
| D. melanogaster |
FBgn0029821 |
| P. vanderplanki |
Pv.02896 |
| N. vitripennis |
NV10293-PA |
| B. mori |
BGIBMGA011217-TA |
| P. vanderplanki |
Pv.01699 |
| H. melpomene |
HMEL006340-PA |
| D. plexippus |
DPOGS206089PA |
| P. vanderplanki |
Pv.03276 |