MidgeBase gene description page [Pn.14806]
Outline
| Gene ID | Pn.14806 |
| Type | Protein coding gene |
| Scaffold | PnScaf26147 |
| Start | 1954 |
| End | 5172 |
| Direction | + |
Sequence
Transcript: 678 (bp)
ATGTCATTACTCGGGAAACCTCTCAACTACAACCGAGGAGCACGCCGCGATGCCCGCTATCGACGCCTTCAATCACGCGTTTACAACTTCCTAGAACGTCCTCGCGGACTGCCAGCCATTTTCTATCATGTATTGGTGTTTCTAATGGTTTTCACCTGCTTGGCCCTAAGTGTCTTTTCAACGATCGAAGAGTTCGAGAAGGAAGCACTTGCCTTGCTATTTGTAATGGAAATTATCGTAGTGATCTGGTTTACAATAGAATTTGGTCTCAGGATTTGGGCATCAGGATGTCGATCGCGATACCAGGGCGGCATCGGCCGCCTAAAATTCTTGAAAAGACCATTTTGTATCATAGACATAGTAACAATAGCAGCTTCGATTGTGGTAATCGGCATGGGAGCGTCGAGCATGTTCGCCACAAGTGCTCTTCGTGGTTTACGTTTCTTCCAAATCCTCCGAATGGTTCGCATGGATCGACGAGGCGGTACTTGGAAGTTGCTAGGCAGCGTGGTCTATGCCCACAGACAAGAACTTATAACAACGTTATACATCGGATTTCTAGGCCTTATATTCGCGTCATTTTTAGTTTATTTAATGGAAAAAGACCAACTCAACACGAAATTCAACAACTTTGCTCAGGCATTATGGTGGGGTGTCGTAAATAACTCTATGCACAGG
Protein: 226 (aa)
MSLLGKPLNYNRGARRDARYRRLQSRVYNFLERPRGLPAIFYHVLVFLMVFTCLALSVFSTIEEFEKEALALLFVMEIIVVIWFTIEFGLRIWASGCRSRYQGGIGRLKFLKRPFCIIDIVTIAASIVVIGMGASSMFATSALRGLRFFQILRMVRMDRRGGTWKLLGSVVYAHRQELITTLYIGFLGLIFASFLVYLMEKDQLNTKFNNFAQALWWGVVNNSMHR
| Type | Start | End | Length |
| CDS |
1954 |
2090 |
137 |
| CDS |
3200 |
3334 |
135 |
| CDS |
4510 |
4592 |
83 |
| CDS |
4666 |
4838 |
173 |
| CDS |
4910 |
5042 |
133 |
| CDS |
5153 |
5169 |
17 |
| intron |
2091 |
3199 |
1109 |
| intron |
3335 |
4509 |
1175 |
| intron |
4593 |
4665 |
73 |
| intron |
4839 |
4909 |
71 |
| intron |
5043 |
5152 |
110 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NP_788300 |
KCNQ potassium channel, isoform F [Drosophila melanogaster] gb|AAF58829.5| KCNQ potassium channel, isoform F [Drosophila melanogaster] |
1e-110 |
| InterPro |
IPR005821 |
Ion transport domain |
|
| InterPro |
IPR003091 |
Voltage-dependent potassium channel |
|
| InterPro |
IPR003937 |
Potassium channel, voltage dependent, KCNQ |
|
| Gene Ontology(BP) |
GO:0055085 |
transmembrane transport |
|
| Gene Ontology(BP) |
GO:0006813 |
potassium ion transport |
|
| Gene Ontology(BP) |
GO:0006811 |
ion transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0008076 |
voltage-gated potassium channel complex |
|
| Gene Ontology(MF) |
GO:0005249 |
voltage-gated potassium channel activity |
|
| Gene Ontology(MF) |
GO:0005216 |
ion channel activity |
|
| Pfam |
PF00335.15 |
Tetraspanin family |
4.3 |
| Pfam |
PF03073.10 |
TspO/MBR family |
0.0065 |
| Pfam |
PF00520.26 |
Ion transport protein |
3.5e-20 |
| Pfam |
PF06197.8 |
Protein of unknown function (DUF998) |
0.022 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000056258 |
| H. sapiens |
ENSP00000406735 |
| H. sapiens |
ENSP00000347853 |
| H. sapiens |
ENSP00000353668 |
| H. sapiens |
ENSP00000423756 |
| H. sapiens |
ENSP00000428790 |
| H. sapiens |
ENSP00000385501 |
| H. sapiens |
ENSP00000359241 |
| A. aegypti |
AAEL014162 |
| H. sapiens |
ENSP00000347326 |
| H. melpomene |
HMEL013345-PA |
| H. sapiens |
ENSP00000345523 |
| D. plexippus |
DPOGS203668PA |
| H. sapiens |
ENSP00000384453 |
| H. sapiens |
ENSP00000345055 |
| M. musculus |
ENSMUSG00000028033 |
| H. sapiens |
ENSP00000352718 |
| B. mori |
BGIBMGA003731-TA |
| T. castaneum |
TC004640 |
| A. gambiae |
AGAP006347 |
| H. sapiens |
ENSP00000352035 |
| H. sapiens |
ENSP00000359244 |
| H. sapiens |
ENSP00000359425 |
| H. sapiens |
ENSP00000429799 |
| H. sapiens |
ENSP00000359419 |
| H. sapiens |
ENSP00000349789 |
| H. sapiens |
ENSP00000346601 |
| D. melanogaster |
FBgn0033494 |
| H. sapiens |
ENSP00000409861 |
| M. musculus |
ENSMUSG00000016346 |
| H. sapiens |
ENSP00000262916 |
| H. sapiens |
ENSP00000373648 |
| H. sapiens |
ENSP00000399612 |
| H. sapiens |
ENSP00000339611 |
| M. musculus |
ENSMUSG00000028631 |
| H. sapiens |
ENSP00000359242 |
| C. quinquefasciatus |
CPIJ004925 |
| N. vitripennis |
NV11080-PA |
| H. sapiens |
ENSP00000359246 |
| P. humanus |
PHUM502480-PA |
| P. vanderplanki |
Pv.05264 |