MidgeBase gene description page [Pn.14765]
Outline
Gene ID | Pn.14765 |
Type | Protein coding gene |
Scaffold | PnScaf25888 |
Start | 207 |
End | 572 |
Direction | - |
Sequence
Transcript: 303 (bp)
ATGGCGGCCCTCAGCCAGAGCGACCTGAAGAAGTTCGACTTTGACGTGCGGCGCATCAACTGGGACAAGTTCTGCGAGGACTACTTCCTCGGCATCCGCAAGTACGTCGTTAAGGACAAGTCCGAGAACTTCCCGGCGCTGAGGAGGCGAGTCGCTGCGTTCAGGTACGCCGGCTTTCTCTTCATGGGAGCTGTCGGAGGAGCCTCGTCGCTGTATGTGTTCAACAAGCTCGGAAAGTCGACGGAGAAGAAGAGCGAAACCGTGAGGGACCGGACTGTGTTTGCGCCCTCGCTCAGCTTCGGC
Protein: 101 (aa)
MAALSQSDLKKFDFDVRRINWDKFCEDYFLGIRKYVVKDKSENFPALRRRVAAFRYAGFLFMGAVGGASSLYVFNKLGKSTEKKSETVRDRTVFAPSLSFG
Type | Start | End | Length |
CDS |
210 |
354 |
145 |
CDS |
415 |
572 |
158 |
intron |
355 |
414 |
60 |
Auto annotation result
Program/Analysis | Accession | Description | Score/Expectation |
BLASTP/NCBI-nr |
XP_003142758 |
male sterility protein [Loa loa] gb|EFO21314.1| male sterility protein [Loa loa] |
2e-07 |
InterPro |
IPR004262 |
Male sterility |
|
Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
Gene Ontology(MF) |
GO:0016620 |
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
|
Pfam |
PF07096.6 |
Protein of unknown function (DUF1358) |
0.022 |
Pfam |
PF03015.14 |
Male sterility protein |
2.3e-07 |
Pfam |
PF03241.8 |
4-hydroxyphenylacetate 3-hydroxylase C terminal |
0.1 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes