MidgeBase gene description page [Pn.14765]

Outline

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Gene ID Pn.14765
Type Protein coding gene
Scaffold PnScaf25888
Start 207
End 572
Direction -

Sequence

Transcript: 303 (bp)

 ATGGCGGCCCTCAGCCAGAGCGACCTGAAGAAGTTCGACTTTGACGTGCGGCGCATCAACTGGGACAAGTTCTGCGAGGACTACTTCCTCGGCATCCGCAAGTACGTCGTTAAGGACAAGTCCGAGAACTTCCCGGCGCTGAGGAGGCGAGTCGCTGCGTTCAGGTACGCCGGCTTTCTCTTCATGGGAGCTGTCGGAGGAGCCTCGTCGCTGTATGTGTTCAACAAGCTCGGAAAGTCGACGGAGAAGAAGAGCGAAACCGTGAGGGACCGGACTGTGTTTGCGCCCTCGCTCAGCTTCGGC 

Protein: 101 (aa)

 MAALSQSDLKKFDFDVRRINWDKFCEDYFLGIRKYVVKDKSENFPALRRRVAAFRYAGFLFMGAVGGASSLYVFNKLGKSTEKKSETVRDRTVFAPSLSFG 
Type Start End Length
CDS 210 354 145
CDS 415 572 158
intron 355 414 60

Auto annotation result

Program/Analysis Accession Description Score/Expectation
BLASTP/NCBI-nr XP_003142758 male sterility protein [Loa loa] gb|EFO21314.1| male sterility protein [Loa loa] 2e-07
InterPro IPR004262 Male sterility
Gene Ontology(BP) GO:0055114 oxidation-reduction process
Gene Ontology(MF) GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
Pfam PF07096.6 Protein of unknown function (DUF1358) 0.022
Pfam PF03015.14 Male sterility protein 2.3e-07
Pfam PF03241.8 4-hydroxyphenylacetate 3-hydroxylase C terminal 0.1

Expression level (RPKM)

Paralog/Ortholog genes

Paralogous genes

Gene ID

Orthologous genes

Species Gene ID