MidgeBase gene description page [Pn.14663]
Outline
| Gene ID | Pn.14663 |
| Type | Protein coding gene |
| Scaffold | PnScaf25285 |
| Start | 5964 |
| End | 6458 |
| Direction | + |
Sequence
Transcript: 423 (bp)
ATGAAGACTTCATTTGCAATCATTCTCCTTGCTGCAGTATTCTTCTGTGCTGAAGCGAAGATCTATACAAAGTGCGAGCTCGTCCGGGCGCTTTATAAGGCTGGCATTCCCAAGGGTGACCTACCGAACTGGGCGTGCTTGGTGCAATCCGAAAGCAACTACAATTCGCGGGCTGTCGGTGGTCCGAACTCGGACAAGTCGTATGACTACGGCATTTTCCAAATTAACTCACGGTACTGGTGCAGAATCGGCTCTGTTGGCGGCGACTGTAATCTCAATTGCAATTCTCTGATTAATGACGACATCGGTGACGACATTACCTGCGCCAAAATCATTTACAAACGCCACGGTTTCTCGGCTTGGTATGGCTGGAAGAACAAGTGCAACGGAAAGCCTCTTCCAAGTATTGGCGAGTGTGGAATC
Protein: 141 (aa)
MKTSFAIILLAAVFFCAEAKIYTKCELVRALYKAGIPKGDLPNWACLVQSESNYNSRAVGGPNSDKSYDYGIFQINSRYWCRIGSVGGDCNLNCNSLINDDIGDDITCAKIIYKRHGFSAWYGWKNKCNGKPLPSIGECGI
| Type | Start | End | Length |
| CDS |
5964 |
6249 |
286 |
| CDS |
6319 |
6455 |
137 |
| intron |
6250 |
6318 |
69 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_308481 |
AGAP007347-PA [Anopheles gambiae str. PEST] sp|Q17005.2|LYSC1_ANOGA RecName: Full=Lysozyme c-1; AltName: Full=1,4-beta-N-acetylmuramidase; Flags: Precursor gb|EAA45417.1| AGAP007347-PA [Anopheles gambiae str. PEST] gb|AAY24699.1| lysozyme c-1 [Anopheles gambiae] |
7e-38 |
| InterPro |
IPR001916 |
Glycoside hydrolase, family 22 |
|
| InterPro |
IPR019799 |
Glycoside hydrolase, family 22, conserved site |
|
| InterPro |
IPR000974 |
Glycoside hydrolase, family 22, lysozyme |
|
| InterPro |
IPR023346 |
Lysozyme-like domain |
|
| Gene Ontology(BP) |
GO:0016998 |
cell wall macromolecule catabolic process |
|
| Gene Ontology(MF) |
GO:0003796 |
lysozyme activity |
|
| Pfam |
PF01464.15 |
Transglycosylase SLT domain |
9.1e-06 |
| Pfam |
PF03356.10 |
Viral late protein H2 |
0.1 |
| Pfam |
PF06737.9 |
Transglycosylase-like domain |
0.0028 |
| Pfam |
PF00062.15 |
C-type lysozyme/alpha-lactalbumin family |
2.3e-35 |
| Pfam |
PF05497.7 |
Destabilase |
0.013 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.14662 |
| Pn.04389 |
Orthologous genes
| Species |
Gene ID |
| D. melanogaster |
FBgn0004429 |
| C. quinquefasciatus |
CPIJ005450 |
| A. gambiae |
AGAP007346 |
| A. gambiae |
AGAP007345 |
| D. melanogaster |
FBgn0004426 |
| H. melpomene |
HMEL002661-PA |
| D. melanogaster |
FBgn0004430 |
| P. vanderplanki |
Pv.01159 |
| P. vanderplanki |
Pv.01160 |
| M. musculus |
ENSMUSG00000020177 |
| A. gambiae |
AGAP007343 |
| D. melanogaster |
FBgn0004427 |
| M. musculus |
ENSMUSG00000069515 |
| H. sapiens |
ENSP00000261267 |
| D. plexippus |
DPOGS214912PA |
| P. vanderplanki |
Pv.01158 |
| P. vanderplanki |
Pv.01157 |
| M. musculus |
ENSMUSG00000069516 |
| D. plexippus |
DPOGS202823PA |
| A. aegypti |
AAEL003723 |
| B. mori |
BGIBMGA010439-TA |
| D. melanogaster |
FBgn0004425 |
| D. melanogaster |
FBgn0004428 |
| A. aegypti |
AAEL003712 |
| A. gambiae |
AGAP007347 |
| P. vanderplanki |
Pv.01156 |
| D. melanogaster |
FBgn0004431 |
| A. gambiae |
AGAP007344 |
| D. melanogaster |
FBgn0050062 |