MidgeBase gene description page [Pn.14600]
Outline
| Gene ID | Pn.14600 |
| Type | Protein coding gene |
| Scaffold | PnScaf25000 |
| Start | 3996 |
| End | 5586 |
| Direction | - |
Sequence
Transcript: 213 (bp)
ATGCATCAAGATCAAAATAACGATAAAAACTCGAAACAGAAACGACACCGGACGCGCTTCACACCGGCCCAGCTGAACGAGCTCGAGCGGTGCTTCGGCAAGACGCATTATCCGGACATTTTTATGCGCGAAGAAATTGCTATGAGAATCGGACTAACCGAGTCACGCGTGCAAAGCATCGTTGAGACTTCTTGCGTCGAGGCAGAAGGTATT
Protein: 71 (aa)
MHQDQNNDKNSKQKRHRTRFTPAQLNELERCFGKTHYPDIFMREEIAMRIGLTESRVQSIVETSCVEAEGI
| Type | Start | End | Length |
| CDS |
3999 |
4037 |
39 |
| CDS |
5230 |
5288 |
59 |
| CDS |
5397 |
5496 |
100 |
| CDS |
5572 |
5586 |
15 |
| intron |
4038 |
5229 |
1192 |
| intron |
5289 |
5396 |
108 |
| intron |
5497 |
5571 |
75 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001865837 |
conserved hypothetical protein [Culex quinquefasciatus] gb|EDS42334.1| conserved hypothetical protein [Culex quinquefasciatus] |
9e-24 |
| InterPro |
IPR001356 |
Homeodomain |
|
| InterPro |
IPR009057 |
Homeodomain-like |
|
| Gene Ontology(BP) |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Gene Ontology(MF) |
GO:0043565 |
sequence-specific DNA binding |
|
| Gene Ontology(MF) |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
|
| Pfam |
PF08880.6 |
QLQ |
0.12 |
| Pfam |
PF00046.24 |
Homeobox domain |
2.5e-15 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS212645PA |
| N. vitripennis |
NV13653-PA |
| S. invicta |
SI2.2.0_02202 |
| P. vanderplanki |
Pv.04898 |
| B. mori |
BGIBMGA013947-TA |
| H. melpomene |
HMEL013631-PA |
| C. quinquefasciatus |
CPIJ015363 |