MidgeBase gene description page [Pn.14595]
Outline
| Gene ID | Pn.14595 |
| Type | Protein coding gene |
| Scaffold | PnScaf24948 |
| Start | 827 |
| End | 3743 |
| Direction | - |
Sequence
Transcript: 1218 (bp)
ATGGATCCGATGATCAGCCTTGTTATAAAAGTACAGCAGTTTGAAGATAAAAGAATTGAGGCAAGAGCATCATGGAATATTAGAGAACTAAAAGGGAAATTGAGCGAAATTTATCCAACTAGCACCGACGAACAAAAACTTATTTATTCGGGAAAGTTGCTGAACGATACGGTGATATTAAAGGACGTCTTGCGAGAATACGAAGGACAAGAGGCTCATACAGTGCACTTAGTTTTTACGCCGAAACAGCAGAACTCACGTCTTCAGAACAAATACCAGTCGGAAAACGACAGGCCTCATTCAATTGTTGAAACATCATCAACAGAAATGAGCACAAGCGAATTGAGACAGAGGCGCACGTCTTCAACAACCTCCACAACTACTAACACGGTTACTGATCAGCAGCAACAACAAACGACAAATAGCGCAAACATTCCAAGTAATATCTTCAGCGCTTTCTATGGAAACACTACAAATGGAGCACCGATGGATGCAAATAGTTTTTTGGCTCAACAATATGCAATGCAAACATGGATGCAGCAGGCTTATGCTCAATACATGAACCAATACATGAACATAATGTCGCAATCAGAACAACAACCTCGAACGTCGGTGAATTTAGCGTTCATGCAACATTCTCTGGCTACTGTTGCAACATCGTCCTCACCGAATCCAGACACTCAAGCAGCGGCCGTTGCACCGCAAGTCGAACAGCCTCAGAACCAACCTGCAGCCGAGCCACAACGTAGATTTCCAAACATCATTCAAGATGAGCAAGAAAATCGCGACTGGCTTGATATTCTCTATTCAATGTCTCGTCTTATGATTCTTCTATGTCTGGTTTATTTTTACTCGTCGCCTCTCCGATGTCTCATTGTTATTCTCATAGCCGTTTCAATTTATTTATATCACATTTACAGACAGAATCAGAATCGTCTTAATAATAATAATACAAATCGTGTAAATCTTAATAATGTCGATAGACCGGCTGCAGCCCCACAACCTTTAGAGCCTAGGTCGGAAAGTGCCGAAAGAACTGAGAATCAGCAAGCTACAGATACAGCTGAAAATAGCGATAGTGTTAACAGTGAAAACGAACCTTTGATAAACGTTGAAGAATCTACAACAAGCGATGAACCCCAAGTTTCGCTGTTGACAATGATGAGGACTTTTGTCGTTTCGTTTGTCGCTTCAATCATCCCGGACCATCCTGCAATG
Protein: 406 (aa)
MDPMISLVIKVQQFEDKRIEARASWNIRELKGKLSEIYPTSTDEQKLIYSGKLLNDTVILKDVLREYEGQEAHTVHLVFTPKQQNSRLQNKYQSENDRPHSIVETSSTEMSTSELRQRRTSSTTSTTTNTVTDQQQQQTTNSANIPSNIFSAFYGNTTNGAPMDANSFLAQQYAMQTWMQQAYAQYMNQYMNIMSQSEQQPRTSVNLAFMQHSLATVATSSSPNPDTQAAAVAPQVEQPQNQPAAEPQRRFPNIIQDEQENRDWLDILYSMSRLMILLCLVYFYSSPLRCLIVILIAVSIYLYHIYRQNQNRLNNNNTNRVNLNNVDRPAAAPQPLEPRSESAERTENQQATDTAENSDSVNSENEPLINVEESTTSDEPQVSLLTMMRTFVVSFVASIIPDHPAM
| Type | Start | End | Length |
| CDS |
830 |
1142 |
313 |
| CDS |
1218 |
1544 |
327 |
| CDS |
1609 |
2066 |
458 |
| CDS |
3624 |
3743 |
120 |
| intron |
1143 |
1217 |
75 |
| intron |
1545 |
1608 |
64 |
| intron |
2067 |
3623 |
1557 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001649465 |
hypothetical protein AaeL_AAEL014732 [Aedes aegypti] gb|EAT33011.1| conserved hypothetical protein [Aedes aegypti] |
2e-48 |
| InterPro |
IPR000626 |
Ubiquitin |
|
| InterPro |
IPR019955 |
Ubiquitin supergroup |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF13881.1 |
Ubiquitin-2 like Rad60 SUMO-like |
0.00011 |
| Pfam |
PF10883.3 |
Protein of unknown function (DUF2681) |
0.25 |
| Pfam |
PF13567.1 |
Domain of unknown function (DUF4131) |
0.073 |
| Pfam |
PF00240.18 |
Ubiquitin family |
1.2e-08 |
| Pfam |
PF10302.4 |
DUF2407 ubiquitin-like domain |
0.0011 |
| Pfam |
PF05843.9 |
Suppressor of forked protein (Suf) |
2.4 |
| Pfam |
PF11976.3 |
Ubiquitin-2 like Rad60 SUMO-like |
0.015 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ000417 |
| M. musculus |
ENSMUSG00000008429 |
| A. mellifera |
GB14378-PA |
| S. invicta |
SI2.2.0_80677 |
| P. vanderplanki |
Pv.04022 |
| H. sapiens |
ENSP00000379390 |
| B. mori |
BGIBMGA013972-TA |
| D. plexippus |
DPOGS211726PA |
| H. sapiens |
ENSP00000310729 |
| P. humanus |
PHUM379800-PA |
| A. aegypti |
AAEL014732 |
| D. melanogaster |
FBgn0031950 |
| T. castaneum |
TC010160 |
| H. melpomene |
HMEL017354-PA |
| A. gambiae |
AGAP008633 |