MidgeBase gene description page [Pn.14568]
Outline
| Gene ID | Pn.14568 |
| Type | Protein coding gene |
| Scaffold | PnScaf24879 |
| Start | 15992 |
| End | 16902 |
| Direction | + |
Sequence
Transcript: 765 (bp)
ATGTTTAAGAACGCTGTTGCTTTAGTGACTGGTGGGGGAAGCGGTCTCGGTCGAGCAGTAGTCGAGCGATTCGCAAGAGCCGGATCTAAGGTTGTAATCGGCGACCTAAAAAATTCGCCCGGCGAAGACTTGGCGCAAGAACTCGGCGGCAATGTCACCTTCGTCCCGATGGATGTCACTTCGGAGAACGACGTCAACGAGGCATTGAGTGTCGCAAAGAAAAAGTATGGCGGCCTCCATGTTGCCGTCAATTGTGCTGGAATTGCAGTTGCAGTCAAAACCTACAATTTCAATAAAAAGACGCCTCATAATCTCGACTCGTTTGCCAAGGTCATTAACGTTAACACCGTTGGCACCTTCAACGTTATCAGATTGGCCGCAGGGATGATTGGTGAAAATCAGGCCGATAAGGATGGGCAAAGAGGTGTGATTATAAATACGGCTTCGGTTGCTGCATATGACGGTCAGATCGGACAGTCCGCATATGCCGCCTCAAAGGCAGCCGTTGTCGGAATGACACTTCCAATCGCACGAGATTTGTCGACACAGGGCATTCGTGTTGTCACCATCGCTCCGGGTCTTTTTGATACACCAATGTTGCAGGCTTTGCCCGACAAAATTCGTTCATTTTTGGCCAAGACTGTCCCGTTCCCACAACGCTTAGGCGATCCCGACGAGTTTGCTCATCTCGTCGAAGCAATAGTCGACAATCCAATGCTTAATGGTGAAACCATTCGTTTAGATGGCGCTTTGCGCATGATGCCA
Protein: 255 (aa)
MFKNAVALVTGGGSGLGRAVVERFARAGSKVVIGDLKNSPGEDLAQELGGNVTFVPMDVTSENDVNEALSVAKKKYGGLHVAVNCAGIAVAVKTYNFNKKTPHNLDSFAKVINVNTVGTFNVIRLAAGMIGENQADKDGQRGVIINTASVAAYDGQIGQSAYAASKAAVVGMTLPIARDLSTQGIRVVTIAPGLFDTPMLQALPDKIRSFLAKTVPFPQRLGDPDEFAHLVEAIVDNPMLNGETIRLDGALRMMP
| Type | Start | End | Length |
| CDS |
15992 |
16000 |
9 |
| CDS |
16071 |
16610 |
540 |
| CDS |
16684 |
16899 |
216 |
| intron |
16001 |
16070 |
70 |
| intron |
16611 |
16683 |
73 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFR25520 |
hypothetical protein AND_09073 [Anopheles darlingi] |
1e-109 |
| InterPro |
IPR020904 |
Short-chain dehydrogenase/reductase, conserved site |
|
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR002347 |
Glucose/ribitol dehydrogenase |
|
| InterPro |
IPR002198 |
Short-chain dehydrogenase/reductase SDR |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0016491 |
oxidoreductase activity |
|
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
5.4e-06 |
| Pfam |
PF01073.14 |
3-beta hydroxysteroid dehydrogenase/isomerase family |
0.00023 |
| Pfam |
PF13561.1 |
Enoyl-(Acyl carrier protein) reductase |
4.9e-16 |
| Pfam |
PF13460.1 |
NADH(P)-binding |
0.007 |
| Pfam |
PF00106.20 |
short chain dehydrogenase |
1.1e-31 |
| Pfam |
PF08659.5 |
KR domain |
2.5e-13 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. melanogaster |
FBgn0021765 |
| T. castaneum |
TC003351 |
| A. gambiae |
AGAP003414 |
| P. humanus |
PHUM489260-PA |
| N. vitripennis |
NV10288-PB |
| S. invicta |
SI2.2.0_03504 |
| C. quinquefasciatus |
CPIJ014285 |
| N. vitripennis |
NV10288-PA |
| A. mellifera |
GB13680-PA |
| P. vanderplanki |
Pv.11804 |
| H. sapiens |
ENSP00000168216 |
| A. aegypti |
AAEL009328 |
| D. plexippus |
DPOGS206141PA |
| B. mori |
BGIBMGA000511-TA |
| H. sapiens |
ENSP00000364453 |
| M. musculus |
ENSMUSG00000025260 |
| A. aegypti |
AAEL009324 |
| H. melpomene |
HMEL008776-PA |