MidgeBase gene description page [Pn.14537]
Outline
| Gene ID | Pn.14537 |
| Type | Protein coding gene |
| Scaffold | PnScaf24782 |
| Start | 282 |
| End | 20938 |
| Direction | - |
Sequence
Transcript: 2508 (bp)
ATGAATAACAACTATTTTTCTTACGATGAAAGTGCAATCTGCAATTATGGATGTGAGAATCCAAATCAATGTGAATATTACAACAATAATGGTGGTCACTTGGCTAACTTTATGCCAACGCAACCACAGGAACAAGTTTCAGCCCAGCAACAATTTTTAGAAAATAATGTCCATCCATATGCGACCAACAATTACACCAATTATGGTGATAGCGTTGTTCCAACAAATATTTATGAAAACCAAATCAATGATTATCAATCAATCAGTTATGTGCAGCAACCGACTCATAATAGCTACTATGCAAGCACAAGTCAAAGTGTACCCTATGACTCAAATAATCTTTCGATTGACAAAAATCAGCCTCAAGTCGGAACAACGATGAACTTTAACGATACATATGATTCATTTCAAACATATCCACCTTGTCAAGGTCCTCAGCCTTGGAATTTTGCTCATTGCTACGGTTACTTCGGAGATGCTCCTTGTCAATTTGCTAACATCGCAAGTGTAATTGATATGGAAGATTTTATGAATAATGAAAAAAGAAAAGAAAAGTCGCGTGATGCGGCACGCTGTCGGCGATCGAGAGAAACGGAAATTTTCACTGAACTTGCAAATTCTCTTCCCATCAAGCAAGAAGAAATCGACCACCTCGATAAAGCATCCGTCATGCGTTTGTCAATCGCATTTCTCAAAATTCGTAGTATGCTCGAGTTGTTTCCCAAAATTAAGAATCTGGATTTACCAGTAGGCTCAGCAAATGGCCCAGATAATGATGCAGATGATGACATAAAGGACGTTAAAATTGACGTTTTAAGGAAAATTGTCGAAGATGAAAAATTTGCTCTTAAAGCTCTGGACGGGTTTCTGCTTGTTCTCAATGCCGACGGCGACATCACATATGTGTCACAAAATATTGCCGAGTACTTGGGATTATCGAAGATTGACTTATTGGGACAGCCGATTTGGGATTATTCACATGCCTGTGATCATGATGAGCTGCGTGAAATGTTAAATGGTCGTAAAACTTCACCGTCTGAAGTAGTGAATGGATCGAAAACAGCTGATTGTAATCCGCTAGTACATCGCGATATGATGCTTCGACTAAAATGCACACTCACCAAAAGTGGACGATTTGTCAACATTAAAAGTGCTTCTTATAAGGTGATTCATTTAACGGGTCACATTGTGTTTAAAGATGATGGTTATCGTCAACTGCTTGCTATTGGACGGCCTCTTGCTCATCCATCGAACATCGAAATTCCTTTGGGCTCGAGCACTTTCCTCACTAAACACACTTTGGACATGAAGTTTAGTTTCGTCGATAGTCCAAAAATGTTCGAACTAATGGGCTACAAACCCGAACACTTGCTTGGCAAGTCCCTCTATGAGTATCATCATGGCGACGATTCGGATAGTCTGCTGACAAGCTTCAAGTGTCTAATCAGCAAAGGTCAAACTGAAACGAACCGATATCGGTTTTTGGCACGTAATGGTGGTTATGTGTGGATTGTTACCCAGGCAACTGTAGTTTTCGAAAAACAGAAGCCCCAAAGTGTCGTCTGTGTTAATTACGTAGTGAGTGGAATAGAAAATGAGCATGAAATTTATTCCTGTGCTCAACTCGAAGCACAGCAACAAGAGTTATCAAAGGCAGTTGACGCAAAAGGATCCATAGTCGAGACACAGAGTGAAGCAAAAGTGATTAAAAAGGACAATATTGTACTCGGTATAAGTGACTTGAAGCAACAACAGCAGAGGAAATTGTCGACTACTGAAGCAAAGAACGCTAGTGCTAAAGGCGTTGCTGTTAAAACTGTCGAAAAAAAGGAAGGCAATAGTGACAGCAGTAACATTGGACAATCAGTGGCCGCAATCAATCCAATAATAAATACAATTAAAGTTAATAACTGTGAAATTATAAATCGGCGACCGCGCTCCGTAACGGCTGCAATTTTCGCACAATCTACTGTTTTAAATTCAAAACCATCAGCAACGACAGCAGTACCGAACTTGCCTCCATCGAAAATTGCTACTGAGCCGAAGCAAAAGGCATCGACAAAAAAATTCTCAGACATTAAAGTGTTTCGTCCGACACAACAAATTAACACTACAAGCGTTACATCAACAATCTTTGCTCCACGCACAAAGGACATGAATAAAGGATATTTGATGTTTTCAGAGGACGATACTGGACTAACGATGCTGAAAGATGAACCGGACGATTTAACACATTTGGCACCAACCGCAGGAGACGCATGCATTTCTCTTGATGAATCAGCACCGTTTTTTGATATGTTTGACGATTTTATGATACCCGACAACTACAATGCTCTGCTCACAGACGATTTGGATAGTCAATGCAGCAAGGCGACATCTAGCAGTTCAAGTAATGATCCGTTTATAAATTATAGAGATGAGTCAAGTGACGTTAGCAATTCGCCACATTTGCTTTCACCAGGATTGTCGAAGCTTGATAATGAAAGCATTTCTAAAGACTTGCGAAAA
Protein: 836 (aa)
MNNNYFSYDESAICNYGCENPNQCEYYNNNGGHLANFMPTQPQEQVSAQQQFLENNVHPYATNNYTNYGDSVVPTNIYENQINDYQSISYVQQPTHNSYYASTSQSVPYDSNNLSIDKNQPQVGTTMNFNDTYDSFQTYPPCQGPQPWNFAHCYGYFGDAPCQFANIASVIDMEDFMNNEKRKEKSRDAARCRRSRETEIFTELANSLPIKQEEIDHLDKASVMRLSIAFLKIRSMLELFPKIKNLDLPVGSANGPDNDADDDIKDVKIDVLRKIVEDEKFALKALDGFLLVLNADGDITYVSQNIAEYLGLSKIDLLGQPIWDYSHACDHDELREMLNGRKTSPSEVVNGSKTADCNPLVHRDMMLRLKCTLTKSGRFVNIKSASYKVIHLTGHIVFKDDGYRQLLAIGRPLAHPSNIEIPLGSSTFLTKHTLDMKFSFVDSPKMFELMGYKPEHLLGKSLYEYHHGDDSDSLLTSFKCLISKGQTETNRYRFLARNGGYVWIVTQATVVFEKQKPQSVVCVNYVVSGIENEHEIYSCAQLEAQQQELSKAVDAKGSIVETQSEAKVIKKDNIVLGISDLKQQQQRKLSTTEAKNASAKGVAVKTVEKKEGNSDSSNIGQSVAAINPIINTIKVNNCEIINRRPRSVTAAIFAQSTVLNSKPSATTAVPNLPPSKIATEPKQKASTKKFSDIKVFRPTQQINTTSVTSTIFAPRTKDMNKGYLMFSEDDTGLTMLKDEPDDLTHLAPTAGDACISLDESAPFFDMFDDFMIPDNYNALLTDDLDSQCSKATSSSSSNDPFINYRDESSDVSNSPHLLSPGLSKLDNESISKDLRK
| Type | Start | End | Length |
| CDS |
285 |
320 |
36 |
| CDS |
1653 |
1921 |
269 |
| CDS |
4236 |
4855 |
620 |
| CDS |
15351 |
15492 |
142 |
| CDS |
17718 |
17824 |
107 |
| CDS |
17891 |
18060 |
170 |
| CDS |
18122 |
18343 |
222 |
| CDS |
18413 |
18636 |
224 |
| CDS |
18696 |
18883 |
188 |
| CDS |
20409 |
20938 |
530 |
| intron |
321 |
1652 |
1332 |
| intron |
1922 |
4235 |
2314 |
| intron |
4856 |
15350 |
10495 |
| intron |
15493 |
17717 |
2225 |
| intron |
17825 |
17890 |
66 |
| intron |
18061 |
18121 |
61 |
| intron |
18344 |
18412 |
69 |
| intron |
18637 |
18695 |
59 |
| intron |
18884 |
20408 |
1525 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_311959 |
AGAP002942-PA [Anopheles gambiae str. PEST] gb|EAA07597.6| AGAP002942-PA [Anopheles gambiae str. PEST] |
1e-156 |
| InterPro |
IPR001610 |
PAC motif |
|
| InterPro |
IPR013655 |
PAS fold-3 |
|
| InterPro |
IPR013767 |
PAS fold |
|
| InterPro |
IPR000014 |
PAS domain |
|
| InterPro |
IPR011598 |
Helix-loop-helix DNA-binding |
|
| Gene Ontology(BP) |
GO:0007165 |
signal transduction |
|
| Gene Ontology(BP) |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0004871 |
signal transducer activity |
|
| Pfam |
PF13426.1 |
PAS domain |
3.7e-13 |
| Pfam |
PF08448.5 |
PAS fold |
2.8e-08 |
| Pfam |
PF00989.19 |
PAS fold |
1.3e-18 |
| Pfam |
PF13188.1 |
PAS domain |
0.13 |
| Pfam |
PF08447.6 |
PAS fold |
3e-19 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000451696 |
| P. humanus |
PHUM546550-PA |
| S. invicta |
SI2.2.0_80463 |
| D. melanogaster |
FBgn0015542 |
| A. gambiae |
AGAP002942 |
| P. vanderplanki |
Pv.03520 |
| H. sapiens |
ENSP00000338018 |
| M. musculus |
ENSMUSG00000021109 |
| H. sapiens |
ENSP00000323326 |
| N. vitripennis |
NV15198-PA |
| T. castaneum |
TC013241 |
| A. aegypti |
AAEL015383 |
| M. musculus |
ENSMUSG00000024140 |
| H. sapiens |
ENSP00000406137 |
| H. sapiens |
ENSP00000263734 |
| H. sapiens |
ENSP00000437955 |
| B. mori |
BGIBMGA005097-TA |
| H. melpomene |
HMEL009892-PA |
| H. sapiens |
ENSP00000378446 |
| A. aegypti |
AAEL001097 |
| D. plexippus |
DPOGS200190PA |
| C. quinquefasciatus |
CPIJ003682 |
| A. mellifera |
GB16786-PA |