MidgeBase gene description page [Pn.14504]
Outline
| Gene ID | Pn.14504 |
| Type | Protein coding gene |
| Scaffold | PnScaf24592 |
| Start | 346 |
| End | 3390 |
| Direction | + |
Sequence
Transcript: 1530 (bp)
ATGCAAATGCAAACGGCAAATTTGCAAAATAAAATCACGGTTGAACAGCAACAACAATCAGTAAATTCAGCAATTGAGGGTAACATTACTAACAACAATAACTTGTACAAATCACCACAGAGTCCACTGTTCAGATCTTATCATCATAACAACCAGCAGCCTTATAAGATCCCATCACAGACTTCTTGTTATAGCACGACGAGCCGTATTGTAACAATGCGACAACAATCGCCTCCCCATCAAGTCAGTGGCCAAATGTGTAAATCAATGTCATTTCAACAGCAGCAACAAAGTGCAGCGATTAAAGAGATGTATCGTTCAAACAGTTTGCCAATTAATGCCAACATTCAACTGTCAAAAGAGTTGATCAATTCTACATGTGAAAATTTTGCAGTTCCAAAATATCCTAATTCTTCGTTATCAATATCAAACGTAAAAGGACAAAATTCAAGATCGCGTAGCAATTCAATAAATTTGCGTCAAAATCAACTGACATCGATGCCAATTCAGTCTGCAACCAGTGAACCAGCATTAAATGCAAGCAGTGCGTTGGCTCAGCTGTTAACAAATTCTTCTAGCTCAACCTTGTTAAATGAAAAAGCTCAAATTATTTCATCAAATGCCATGTCTGCTCAGGAGCAACATCAACAGCAAAGAGCCAACAGTTTCACGTCATCATCGTTAGTAAAAAATTCTATCCTACTGGCAGTATCCGCTGCTGCTGCTGCCTCTACAAAACAAACACAACCACAATCATCGTCTTCATCCTTGCATCAAAATTCTTTGTTATCGCCTGAATCTAGTTCTGTTTACCATGAAGCGTCCAACTCTCTTGAAATGCCTACATTATCACCAGAAAGAACTCTAAGTATTGGAAAGTTTAGCTCTCGTGATAGCAGTAACCGTCGTGCAGGCCATATTCATGCCGAACAAAAACGCCGATATAACATAAAAAATGGTTTTGATATGCTGCATAGCTTAATTCCGCAATTACAGCAAAACCCAAATGCAAAGTTAAGTAAAGCTGCAATGCTGCAAAAAGGTGCTGACTACATAAAACAACTCAGATCAGAACGTTCTGCGACTACAGAACAGATGGAATGTCTTCGGAAAGAGATTGAAACTTTGACCAATTCTTTGAATCACTTGCAAAATGCGTTACCAGCGAATGGAGCTCCTGTCAGTCGTCAACGAACGAGTAGAATTCGTGAGATGTATCAAGAATATATTTTACAGAGAACACATAATAACTGGAAATTCTGGATTTTTGGCCTCATTTGTGATCCCCTACTTAATTCATTCACTTCGACCGTATCAACTGCAAGTACAGATGAACTATATCGCACTACGATGCTTTGGATTGATAACAGTTGCTCACTTATGGAAATACGACCAGCTGTTTCCAACAAACTGCGCGAGCTGTCTACAACGACTGACATTCTCTCCGATAATCCTACAACTCTGCAGGAGGAAGTAAAAAAGGCAGTCCAGAATGCTTCTCAACCAAAGTCAAGAGCTCACAGTCCAAGA
Protein: 510 (aa)
MQMQTANLQNKITVEQQQQSVNSAIEGNITNNNNLYKSPQSPLFRSYHHNNQQPYKIPSQTSCYSTTSRIVTMRQQSPPHQVSGQMCKSMSFQQQQQSAAIKEMYRSNSLPINANIQLSKELINSTCENFAVPKYPNSSLSISNVKGQNSRSRSNSINLRQNQLTSMPIQSATSEPALNASSALAQLLTNSSSSTLLNEKAQIISSNAMSAQEQHQQQRANSFTSSSLVKNSILLAVSAAAAASTKQTQPQSSSSSLHQNSLLSPESSSVYHEASNSLEMPTLSPERTLSIGKFSSRDSSNRRAGHIHAEQKRRYNIKNGFDMLHSLIPQLQQNPNAKLSKAAMLQKGADYIKQLRSERSATTEQMECLRKEIETLTNSLNHLQNALPANGAPVSRQRTSRIREMYQEYILQRTHNNWKFWIFGLICDPLLNSFTSTVSTASTDELYRTTMLWIDNSCSLMEIRPAVSNKLRELSTTTDILSDNPTTLQEEVKKAVQNASQPKSRAHSPR
| Type | Start | End | Length |
| CDS |
346 |
1359 |
1014 |
| CDS |
1719 |
1846 |
128 |
| CDS |
1902 |
2025 |
124 |
| CDS |
2089 |
2218 |
130 |
| CDS |
3254 |
3387 |
134 |
| intron |
1360 |
1718 |
359 |
| intron |
1847 |
1901 |
55 |
| intron |
2026 |
2088 |
63 |
| intron |
2219 |
3253 |
1035 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001658274 |
basic helix-loop-helix zip transcription factor [Aedes aegypti] gb|EAT41055.1| basic helix-loop-helix zip transcription factor [Aedes aegypti] |
1e-104 |
| InterPro |
IPR011598 |
Helix-loop-helix DNA-binding |
|
| Pfam |
PF00010.21 |
Helix-loop-helix DNA-binding domain |
5.5e-14 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.07227 |
| C. quinquefasciatus |
CPIJ008846 |
| A. aegypti |
AAEL013944 |
| A. aegypti |
AAEL007271 |
| A. gambiae |
AGAP009806 |